HL_7QCA_033

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GAUCAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_033 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.0689

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7QCA|1|L50|G|1345
7QCA|1|L50|A|1346
7QCA|1|L50|U|1347
7QCA|1|L50|C|1348
7QCA|1|L50|A|1349
7QCA|1|L50|U|1350
7QCA|1|L50|C|1351

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LPP

60S ribosomal protein L37a

Chain LR0

60S ribosomal protein L19