HL_7QCA_042

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGAAGAGAGA

Length

10 nucleotides

Bulged bases

7QCA|1|L50|G|1612, 7QCA|1|L50|G|1616

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QCA|1|L50|U|1608
7QCA|1|L50|G|1609
7QCA|1|L50|A|1610
7QCA|1|L50|A|1611
7QCA|1|L50|G|1612
7QCA|1|L50|A|1613
7QCA|1|L50|G|1614
7QCA|1|L50|A|1615
7QCA|1|L50|G|1616
7QCA|1|L50|A|1617

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LA0

60S ribosomal protein L8

Chain LPP

60S ribosomal protein L37a

Chain S60

Small subunit ribosomal RNA; SSU rRNA