HL_7QCA_043

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GAGGAAAUGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_043 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.3758

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7QCA|1|L50|G|1654
7QCA|1|L50|A|1655
7QCA|1|L50|G|1656
7QCA|1|L50|G|1657
7QCA|1|L50|A|1658
7QCA|1|L50|A|1659
7QCA|1|L50|A|1660
7QCA|1|L50|U|1661
7QCA|1|L50|G|1662
7QCA|1|L50|C|1663

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LII

60S ribosomal protein L36

Chain LOO

60S ribosomal protein L44