HL_7QCA_046

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

7QCA|1|L50|A|1808, 7QCA|1|L50|A|1809, 7QCA|1|L50|C|1810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_046 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.1532

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

7QCA|1|L50|G|1805
7QCA|1|L50|G|1806
7QCA|1|L50|G|1807
7QCA|1|L50|A|1808
7QCA|1|L50|A|1809
7QCA|1|L50|C|1810
7QCA|1|L50|G|1811
7QCA|1|L50|G|1812
7QCA|1|L50|G|1813
7QCA|1|L50|C|1814

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LB0

60S ribosomal protein L3

Chain LEE

60S ribosomal protein L32