HL_7QCA_048

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

UGUUUA

Length

6 nucleotides

Bulged bases

7QCA|1|L50|G|1955, 7QCA|1|L50|U|1956, 7QCA|1|L50|U|1958

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_048 not in the Motif Atlas

Geometric match to HL_4TUW_002

Geometric discrepancy: 0.1035

The information below is about HL_4TUW_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

7QCA|1|L50|U|1954
7QCA|1|L50|G|1955
7QCA|1|L50|U|1956
7QCA|1|L50|U|1957
7QCA|1|L50|U|1958
7QCA|1|L50|A|1959

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LA0

60S ribosomal protein L8

Chain LG0

60S ribosomal protein L8