HL_7QCA_049

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7QCA|1|L50|G|1989

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_049 not in the Motif Atlas

Homologous match to HL_5TBW_054

Geometric discrepancy: 0.1564

The information below is about HL_5TBW_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

7QCA|1|L50|C|1987
7QCA|1|L50|U|1988
7QCA|1|L50|G|1989
7QCA|1|L50|G|1990
7QCA|1|L50|G|1991
7QCA|1|L50|G|1992
7QCA|1|L50|C|1993
7QCA|1|L50|G|1994
7QCA|1|L50|G|1995

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LI0

S60 ribosomal protein L10