HL_7QCA_054

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_054 not in the Motif Atlas

Homologous match to HL_5TBW_059

Geometric discrepancy: 0.1337

The information below is about HL_5TBW_059

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7QCA|1|L50|G|2113
7QCA|1|L50|G|2114
7QCA|1|L50|A|2115
7QCA|1|L50|A|2116
7QCA|1|L50|A|2117
7QCA|1|L50|C|2118

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LD0

60S ribosomal protein L5

Chain LOO

60S ribosomal protein L44

Chain LT0

60s ribosomal protein L21