HL_7QCA_055

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGAGACACUUG

Length

11 nucleotides

Bulged bases

7QCA|1|L50|A|2145

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_055 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3444

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7QCA|1|L50|C|2143
7QCA|1|L50|G|2144
7QCA|1|L50|A|2145
7QCA|1|L50|G|2146
7QCA|1|L50|A|2147
7QCA|1|L50|C|2148
7QCA|1|L50|A|2149
7QCA|1|L50|C|2150
7QCA|1|L50|U|2151
7QCA|1|L50|U|2152
7QCA|1|L50|G|2153

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LAA

uL15 LAA

Chain LII

60S ribosomal protein L36

Chain LOO

60S ribosomal protein L44