HL_7QCA_059

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_059 not in the Motif Atlas

Homologous match to HL_5TBW_064

Geometric discrepancy: 0.0997

The information below is about HL_5TBW_064

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7QCA|1|L50|C|2331
7QCA|1|L50|G|2332
7QCA|1|L50|U|2333
7QCA|1|L50|G|2334
7QCA|1|L50|A|2335
7QCA|1|L50|G|2336

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LA0

60S ribosomal protein L8