HL_7QCA_062

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

CUGGAAGCCUCUAAG

Length

15 nucleotides

Bulged bases

7QCA|1|L50|G|2476, 7QCA|1|L50|C|2480

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_062 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1003

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7QCA|1|L50|C|2470
7QCA|1|L50|U|2471
7QCA|1|L50|G|2472
7QCA|1|L50|G|2473
7QCA|1|L50|A|2474
7QCA|1|L50|A|2475
7QCA|1|L50|G|2476
7QCA|1|L50|C|2477
7QCA|1|L50|C|2478
7QCA|1|L50|U|2479
7QCA|1|L50|C|2480
7QCA|1|L50|U|2481
7QCA|1|L50|A|2482
7QCA|1|L50|A|2483
7QCA|1|L50|G|2484

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LH0

60S ribosomal protein L9

Chain LMM

Ubiquitin

Chain LO0

Ribosomal protein L13A