HL_7QCA_063

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

7QCA|1|L50|A|2520

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QCA_063 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.0903

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7QCA|1|L50|G|2519
7QCA|1|L50|A|2520
7QCA|1|L50|A|2521
7QCA|1|L50|G|2522
7QCA|1|L50|A|2523
7QCA|1|L50|C|2524
7QCA|1|L50|G|2525
7QCA|1|L50|A|2526
7QCA|1|L50|C|2527

Current chains

Chain L50

RNA 23S

Nearby chains

Chain LB0

60S ribosomal protein L3

Chain LDD

60S ribosomal protein L31

Chain LP0

60S ribosomal protein L17