HL_7QCA_101

3D structure

PDB id

7QCA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Spraguea lophii ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GGAUACGAAAGUUAUC

Length

16 nucleotides

Bulged bases

7QCA|1|S60|U|1007, 7QCA|1|S60|U|1018

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QCA|1|S60|G|1004
7QCA|1|S60|G|1005
7QCA|1|S60|A|1006
7QCA|1|S60|U|1007
7QCA|1|S60|A|1008
7QCA|1|S60|C|1009
7QCA|1|S60|G|1010
7QCA|1|S60|A|1011
7QCA|1|S60|A|1012
7QCA|1|S60|A|1013
7QCA|1|S60|G|1014
7QCA|1|S60|U|1015
7QCA|1|S60|U|1016
7QCA|1|S60|A|1017
7QCA|1|S60|U|1018
7QCA|1|S60|C|1019

Current chains

Chain S60

RNA SSU

Nearby chains

Chain SGG

Guanine nucleotide binding protein beta subunit

Chain SQ0

40S ribosomal protein S16

Chain SR0

eS17 SR0

Chain SU0

40S ribosomal protein S20