HL_7QG8_036

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

CAAGCGGUAAG

Length

11 nucleotides

Bulged bases

7QG8|1|M|C|16, 7QG8|1|M|G|17, 7QG8|1|M|G|18, 7QG8|1|M|U|19

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QG8_036 not in the Motif Atlas

Homologous match to HL_1SER_001

Geometric discrepancy: 0.4496

The information below is about HL_1SER_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40252.3

Basepair signature

cWW-tSH-cWS-F

Number of instances in this motif group

5

Unit IDs

7QG8|1|M|C|12
7QG8|1|M|A|13
7QG8|1|M|A|14
7QG8|1|M|G|15
7QG8|1|M|C|16
7QG8|1|M|G|17
7QG8|1|M|G|18
7QG8|1|M|U|19
7QG8|1|M|A|20
7QG8|1|M|A|21
7QG8|1|M|G|22

Current chains

Chain M

P-site tRNA

Nearby chains

Chain N

Large subunit ribosomal RNA; LSU rRNA

Chain S

50S ribosomal protein L5