7QG8 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7QG8_001 | No text annotation | ||
| HL_7QG8_002 | No text annotation | ||
| HL_7QG8_113 | No text annotation | ||
| HL_7QG8_003 | GNRA | ||
| HL_7QG8_004 | GNRA | ||
| HL_7QG8_005 | No text annotation | ||
| HL_7QG8_006 | GNRA related | ||
| HL_7QG8_007 | GNRA | ||
| HL_7QG8_008 | No text annotation | ||
| HL_7QG8_009 | UNCG | ||
| HL_7QG8_010 | GNRA | ||
| HL_7QG8_011 | UNCG | ||
| HL_7QG8_012 | GNRA wlth extra near cWW | ||
| HL_7QG8_013 | No text annotation | ||
| HL_7QG8_014 | GNRA-like with tWH | ||
| HL_7QG8_015 | No text annotation | ||
| HL_7QG8_016 | GNRA | ||
| HL_7QG8_017 | No text annotation | ||
| HL_7QG8_018 | Externally structured | ||
| HL_7QG8_019 | GNRA | ||
| HL_7QG8_020 | GNRA | ||
| HL_7QG8_021 | No text annotation | ||
| HL_7QG8_022 | No text annotation | ||
| HL_7QG8_110 | No text annotation | ||
| HL_7QG8_023 | No text annotation | ||
| HL_7QG8_024 | GNRA | ||
| HL_7QG8_025 | T-loop related | ||
| HL_7QG8_026 | No text annotation | ||
| HL_7QG8_027 | GNRA | ||
| HL_7QG8_028 | GNRA | ||
| HL_7QG8_029 | T-loop with 3 stacked bulged bases | ||
| HL_7QG8_030 | No text annotation | ||
| HL_7QG8_031 | UNCG | ||
| HL_7QG8_032 | GNRA | ||
| HL_7QG8_033 | No text annotation | ||
| HL_7QG8_034 | tRNA anticodon loop | ||
| HL_7QG8_035 | T-loop with 2 stacked bulged bases | ||
| HL_7QG8_036 | No text annotation | ||
| HL_7QG8_037 | tRNA anticodon loop | ||
| HL_7QG8_038 | T-loop with 2 stacked bulged bases | ||
| HL_7QG8_039 | No text annotation | ||
| HL_7QG8_040 | No text annotation | ||
| HL_7QG8_041 | No text annotation | ||
| HL_7QG8_042 | No text annotation | ||
| HL_7QG8_043 | No text annotation | ||
| HL_7QG8_044 | No text annotation | ||
| HL_7QG8_045 | No text annotation | ||
| HL_7QG8_046 | No text annotation | ||
| HL_7QG8_047 | T-loop with 1 bulged base | ||
| HL_7QG8_048 | No text annotation | ||
| HL_7QG8_049 | T-loop with unstacked turn | ||
| HL_7QG8_050 | No text annotation | ||
| HL_7QG8_051 | Pseudoknot geometry | ||
| HL_7QG8_052 | GNRA | ||
| HL_7QG8_053 | GNRA | ||
| HL_7QG8_054 | No text annotation | ||
| HL_7QG8_055 | T-loop with 2 stacked bulged bases | ||
| HL_7QG8_056 | No text annotation | ||
| HL_7QG8_057 | GNRA | ||
| HL_7QG8_058 | No text annotation | ||
| HL_7QG8_059 | GNRA wlth tandem sheared | ||
| HL_7QG8_060 | No text annotation | ||
| HL_7QG8_061 | UNCG variation | ||
| HL_7QG8_062 | No text annotation | ||
| HL_7QG8_063 | No text annotation | ||
| HL_7QG8_064 | GNRA | ||
| HL_7QG8_065 | No text annotation | ||
| HL_7QG8_066 | No text annotation | ||
| HL_7QG8_067 | GNRA wlth tandem sheared | ||
| HL_7QG8_068 | No text annotation | ||
| HL_7QG8_069 | GNRA | ||
| HL_7QG8_070 | T-loop with 2 stacked bulged bases | ||
| HL_7QG8_071 | Pseudoknot geometry with 3' bulge | ||
| HL_7QG8_072 | GNRA | ||
| HL_7QG8_073 | No text annotation | ||
| HL_7QG8_074 | Mini UNCG | ||
| HL_7QG8_075 | Pseudoknot geometry with 3' bulge | ||
| HL_7QG8_076 | UNCG | ||
| HL_7QG8_077 | No text annotation | ||
| HL_7QG8_078 | No text annotation | ||
| HL_7QG8_079 | GNRA | ||
| HL_7QG8_080 | No text annotation | ||
| HL_7QG8_081 | No text annotation | ||
| HL_7QG8_082 | No text annotation | ||
| HL_7QG8_083 | No text annotation | ||
| HL_7QG8_084 | GNRA related | ||
| HL_7QG8_085 | GNRA variation | ||
| HL_7QG8_086 | No text annotation | ||
| HL_7QG8_087 | No text annotation | ||
| HL_7QG8_088 | No text annotation | ||
| HL_7QG8_089 | No text annotation | ||
| HL_7QG8_090 | No text annotation | ||
| HL_7QG8_091 | No text annotation | ||
| HL_7QG8_092 | No text annotation | ||
| HL_7QG8_093 | No text annotation | ||
| HL_7QG8_111 | No text annotation | ||
| HL_7QG8_094 | Pseudoknot geometry | ||
| HL_7QG8_095 | GNRA | ||
| HL_7QG8_096 | GNRA | ||
| HL_7QG8_097 | No text annotation | ||
| HL_7QG8_098 | No text annotation | ||
| HL_7QG8_099 | GNRA variation | ||
| HL_7QG8_100 | No text annotation | ||
| HL_7QG8_101 | GNRA | ||
| HL_7QG8_102 | GNRA | ||
| HL_7QG8_103 | Ribsomal LSU H95 | ||
| HL_7QG8_104 | No text annotation | ||
| HL_7QG8_105 | Mini UNCG | ||
| HL_7QG8_106 | No text annotation | ||
| HL_7QG8_107 | GNRA | ||
| HL_7QG8_112 | No text annotation | ||
| HL_7QG8_108 | No text annotation | ||
| HL_7QG8_109 | Mini UNCG |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7QG8_001 | Single bulged G | ||
| IL_7QG8_002 | Single bulged A | ||
| IL_7QG8_003 | No text annotation | ||
| IL_7QG8_004 | Minor groove platform | ||
| IL_7QG8_005 | Multiple bulged bases | ||
| IL_7QG8_006 | Minor groove platform with extra cWW | ||
| IL_7QG8_007 | Minor groove platform | ||
| IL_7QG8_008 | Single bulged G | ||
| IL_7QG8_009 | Isolated non-canonical cWW pair | ||
| IL_7QG8_010 | Minor groove platform related | ||
| IL_7QG8_011 | Isolated cWH basepair | ||
| IL_7QG8_012 | tWH-tWH-tHW-tHW | ||
| IL_7QG8_013 | Minor groove platform | ||
| IL_7QG8_014 | Kink-turn with non-sequential stacking | ||
| IL_7QG8_015 | No text annotation | ||
| IL_7QG8_016 | C-loop | ||
| IL_7QG8_017 | Single bulged U | ||
| IL_7QG8_018 | C-loop | ||
| IL_7QG8_019 | Single bulged G | ||
| IL_7QG8_020 | No text annotation | ||
| IL_7QG8_021 | No text annotation | ||
| IL_7QG8_022 | tSH-tHW-tWW | ||
| IL_7QG8_023 | No text annotation | ||
| IL_7QG8_024 | SSU/LSU pseudoknot | ||
| IL_7QG8_025 | Kink-turn related | ||
| IL_7QG8_026 | No text annotation | ||
| IL_7QG8_027 | tSH-tHW-tHS | ||
| IL_7QG8_028 | Major groove platform | ||
| IL_7QG8_029 | Major groove minor groove platform; mini C-loop | ||
| IL_7QG8_030 | No text annotation | ||
| IL_7QG8_031 | Major groove platform; stack outside cWW | ||
| IL_7QG8_032 | Single stack bend | ||
| IL_7QG8_033 | Tandem non-canonical cWW pairs | ||
| IL_7QG8_179 | Triple non-canonical cWW pairs | ||
| IL_7QG8_034 | No text annotation | ||
| IL_7QG8_035 | Kink-turn | ||
| IL_7QG8_036 | Left turn | ||
| IL_7QG8_037 | tSH-tHW-tHS | ||
| IL_7QG8_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_7QG8_039 | Single bulged A | ||
| IL_7QG8_040 | Single bulged G | ||
| IL_7QG8_041 | Minor groove platform | ||
| IL_7QG8_042 | Minor groove platform | ||
| IL_7QG8_043 | Minor groove platform | ||
| IL_7QG8_044 | Single stack bend | ||
| IL_7QG8_045 | Single stack bend | ||
| IL_7QG8_046 | Single bulged U | ||
| IL_7QG8_047 | Tandem non-canonical cWW pairs | ||
| IL_7QG8_180 | Isolated cWS basepair | ||
| IL_7QG8_048 | Minor groove platform | ||
| IL_7QG8_049 | Single bulged A | ||
| IL_7QG8_050 | Isolated non-canonical cWW pair | ||
| IL_7QG8_051 | No text annotation | ||
| IL_7QG8_052 | Minor groove platform | ||
| IL_7QG8_053 | No text annotation | ||
| IL_7QG8_054 | No text annotation | ||
| IL_7QG8_055 | 180 degree turn | ||
| IL_7QG8_056 | Double sheared with non-canonical cWW | ||
| IL_7QG8_057 | No text annotation | ||
| IL_7QG8_058 | No text annotation | ||
| IL_7QG8_059 | No text annotation | ||
| IL_7QG8_060 | Isolated non-canonical cWW pair | ||
| IL_7QG8_061 | No text annotation | ||
| IL_7QG8_062 | Isolated non-canonical cWW pair | ||
| IL_7QG8_063 | Double sheared | ||
| IL_7QG8_064 | Triple sheared related | ||
| IL_7QG8_065 | Single bulged A | ||
| IL_7QG8_066 | No text annotation | ||
| IL_7QG8_067 | Triple sheared with non-canonical cWW | ||
| IL_7QG8_068 | Single bulged A | ||
| IL_7QG8_069 | Minor groove platform | ||
| IL_7QG8_070 | No text annotation | ||
| IL_7QG8_071 | Single stack bend | ||
| IL_7QG8_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7QG8_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_7QG8_074 | No text annotation | ||
| IL_7QG8_075 | No text annotation | ||
| IL_7QG8_076 | No text annotation | ||
| IL_7QG8_077 | No text annotation | ||
| IL_7QG8_078 | Double sheared | ||
| IL_7QG8_079 | Isolated non-canonical cWW pair | ||
| IL_7QG8_080 | AAA cross-strand stack | ||
| IL_7QG8_081 | No text annotation | ||
| IL_7QG8_082 | tHW-tHW cross-strand stack | ||
| IL_7QG8_083 | Single bulged A | ||
| IL_7QG8_084 | Single bulged G | ||
| IL_7QG8_085 | Triple sheared | ||
| IL_7QG8_086 | Major groove platform | ||
| IL_7QG8_087 | Multiple bulged bases | ||
| IL_7QG8_088 | 90 degree turn | ||
| IL_7QG8_181 | No text annotation | ||
| IL_7QG8_089 | Stack outside cWW | ||
| IL_7QG8_090 | Single stack bend | ||
| IL_7QG8_091 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_7QG8_092 | Single bulged G | ||
| IL_7QG8_093 | C-loop with bulged stacked A's | ||
| IL_7QG8_094 | Isolated non-canonical cWW pair | ||
| IL_7QG8_095 | Double sheared with non-canonical cWW | ||
| IL_7QG8_096 | No text annotation | ||
| IL_7QG8_097 | Single bulged C | ||
| IL_7QG8_098 | UAA/GAN | ||
| IL_7QG8_099 | SSU/LSU pseudoknot | ||
| IL_7QG8_100 | Single bulged U | ||
| IL_7QG8_101 | Kink-turn related | ||
| IL_7QG8_102 | No text annotation | ||
| IL_7QG8_103 | Isolated non-canonical cWW pair | ||
| IL_7QG8_104 | Tandem non-canonical cWW pairs | ||
| IL_7QG8_105 | Kink-turn | ||
| IL_7QG8_182 | No text annotation | ||
| IL_7QG8_106 | No text annotation | ||
| IL_7QG8_107 | No text annotation | ||
| IL_7QG8_108 | Isolated cWS basepair | ||
| IL_7QG8_109 | No text annotation | ||
| IL_7QG8_110 | Kink-turn | ||
| IL_7QG8_111 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7QG8_112 | Major groove platform; stack outside cWW | ||
| IL_7QG8_113 | Major groove minor groove platform with tHH | ||
| IL_7QG8_114 | UAA/GAN | ||
| IL_7QG8_115 | tSH-tHW-tHS | ||
| IL_7QG8_116 | No text annotation | ||
| IL_7QG8_117 | UAA/GAN | ||
| IL_7QG8_118 | Tandem non-canonical cWW pairs | ||
| IL_7QG8_119 | tSH-tHW | ||
| IL_7QG8_120 | Single bulged U | ||
| IL_7QG8_121 | No text annotation | ||
| IL_7QG8_122 | tSH-tHW-tHS | ||
| IL_7QG8_123 | 180 degree turn | ||
| IL_7QG8_124 | Single bulged A | ||
| IL_7QG8_125 | UAA/GAN variation | ||
| IL_7QG8_126 | No text annotation | ||
| IL_7QG8_127 | Isolated tWW turn | ||
| IL_7QG8_128 | Major groove platform; stack outside cWW | ||
| IL_7QG8_183 | No text annotation | ||
| IL_7QG8_129 | Intercalated tWH | ||
| IL_7QG8_130 | tSH-tSH-tHH-tHS | ||
| IL_7QG8_131 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_7QG8_132 | Triple sheared | ||
| IL_7QG8_133 | Single bulged C | ||
| IL_7QG8_134 | Single bulged A | ||
| IL_7QG8_135 | Kink-turn related | ||
| IL_7QG8_136 | Minor groove platform, major groove intercalation | ||
| IL_7QG8_137 | Major groove intercalation | ||
| IL_7QG8_138 | Major groove minor groove platform; mini C-loop | ||
| IL_7QG8_184 | No text annotation | ||
| IL_7QG8_139 | UAA/GAN related | ||
| IL_7QG8_140 | Bulged stacked bases | ||
| IL_7QG8_141 | No text annotation | ||
| IL_7QG8_142 | Major groove platform | ||
| IL_7QG8_143 | No text annotation | ||
| IL_7QG8_144 | Single bulged U | ||
| IL_7QG8_145 | Minor groove platform | ||
| IL_7QG8_146 | Isolated tHS basepair with bulges | ||
| IL_7QG8_147 | Isolated non-canonical cWW pair | ||
| IL_7QG8_185 | Other IL | ||
| IL_7QG8_148 | Isolated non-canonical cWW pair | ||
| IL_7QG8_149 | No text annotation | ||
| IL_7QG8_186 | No text annotation | ||
| IL_7QG8_187 | No text annotation | ||
| IL_7QG8_150 | Single bulged U | ||
| IL_7QG8_151 | Double sheared | ||
| IL_7QG8_152 | Single bulged U | ||
| IL_7QG8_153 | Single stack bend | ||
| IL_7QG8_154 | Major groove platform | ||
| IL_7QG8_155 | Major groove platform | ||
| IL_7QG8_156 | Major groove minor groove platform with extra cWW | ||
| IL_7QG8_157 | Double sheared with non-canonical cWW | ||
| IL_7QG8_158 | Major groove platform | ||
| IL_7QG8_159 | Isolated non-canonical cWW with bulges | ||
| IL_7QG8_160 | No text annotation | ||
| IL_7QG8_161 | Major groove platform with intercalation | ||
| IL_7QG8_162 | Single bulged A | ||
| IL_7QG8_163 | tSH-tHS-tHW | ||
| IL_7QG8_164 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_7QG8_165 | C-loop | ||
| IL_7QG8_166 | UAA/GAN related, with intercalation | ||
| IL_7QG8_167 | Multiple bulged bases | ||
| IL_7QG8_168 | UAA/GAN with extra cWW | ||
| IL_7QG8_169 | Single bulged A | ||
| IL_7QG8_170 | No text annotation | ||
| IL_7QG8_171 | Major groove intercalation | ||
| IL_7QG8_172 | Multiple bulged bases with non-canonical cWW | ||
| IL_7QG8_173 | tHS double platform | ||
| IL_7QG8_174 | Major groove intercalation | ||
| IL_7QG8_175 | No text annotation | ||
| IL_7QG8_176 | Major groove minor groove platform; mini C-loop | ||
| IL_7QG8_177 | Symmetric double minor groove platform | ||
| IL_7QG8_178 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7QG8_001 | No text annotation | ||
| J3_7QG8_028 | No text annotation | ||
| J3_7QG8_002 | No text annotation | ||
| J3_7QG8_029 | No text annotation | ||
| J3_7QG8_003 | No text annotation | ||
| J3_7QG8_004 | No text annotation | ||
| J3_7QG8_005 | No text annotation | ||
| J3_7QG8_006 | No text annotation | ||
| J3_7QG8_007 | No text annotation | ||
| J3_7QG8_008 | No text annotation | ||
| J3_7QG8_030 | No text annotation | ||
| J3_7QG8_037 | No text annotation | ||
| J3_7QG8_009 | No text annotation | ||
| J3_7QG8_010 | No text annotation | ||
| J3_7QG8_031 | No text annotation | ||
| J3_7QG8_011 | No text annotation | ||
| J3_7QG8_012 | No text annotation | ||
| J3_7QG8_032 | No text annotation | ||
| J3_7QG8_013 | No text annotation | ||
| J3_7QG8_014 | No text annotation | ||
| J3_7QG8_033 | No text annotation | ||
| J3_7QG8_015 | No text annotation | ||
| J3_7QG8_034 | No text annotation | ||
| J3_7QG8_016 | No text annotation | ||
| J3_7QG8_017 | No text annotation | ||
| J3_7QG8_018 | No text annotation | ||
| J3_7QG8_019 | No text annotation | ||
| J3_7QG8_020 | No text annotation | ||
| J3_7QG8_021 | No text annotation | ||
| J3_7QG8_035 | No text annotation | ||
| J3_7QG8_022 | Kink-turn 3-way junction | ||
| J3_7QG8_036 | No text annotation | ||
| J3_7QG8_023 | No text annotation | ||
| J3_7QG8_024 | No text annotation | ||
| J3_7QG8_025 | No text annotation | ||
| J3_7QG8_026 | No text annotation | ||
| J3_7QG8_027 | No text annotation | ||
| J4_7QG8_001 | No text annotation | ||
| J4_7QG8_002 | No text annotation | ||
| J4_7QG8_003 | No text annotation | ||
| J4_7QG8_004 | tRNA junction | ||
| J4_7QG8_005 | tRNA junction | ||
| J4_7QG8_006 | No text annotation | ||
| J4_7QG8_007 | No text annotation | ||
| J4_7QG8_008 | No text annotation | ||
| J4_7QG8_009 | No text annotation | ||
| J4_7QG8_010 | No text annotation | ||
| J4_7QG8_011 | No text annotation | ||
| J4_7QG8_012 | No text annotation | ||
| J4_7QG8_013 | No text annotation | ||
| J4_7QG8_014 | No text annotation | ||
| J4_7QG8_015 | No text annotation | ||
| J4_7QG8_016 | No text annotation | ||
| J5_7QG8_001 | No text annotation | ||
| J5_7QG8_002 | No text annotation | ||
| J5_7QG8_003 | No text annotation | ||
| J5_7QG8_004 | No text annotation | ||
| J5_7QG8_005 | No text annotation | ||
| J5_7QG8_006 | No text annotation | ||
| J5_7QG8_007 | No text annotation | ||
| J5_7QG8_008 | No text annotation | ||
| J6_7QG8_001 | No text annotation | ||
| J6_7QG8_002 | No text annotation | ||
| J7_7QG8_001 | No text annotation | ||
| J7_7QG8_002 | No text annotation |
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