HL_7QG8_051

3D structure

PDB id

7QG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.97 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7QG8|1|N|G|411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QG8_051 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0793

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7QG8|1|N|G|410
7QG8|1|N|G|411
7QG8|1|N|A|412
7QG8|1|N|C|413
7QG8|1|N|C|414
7QG8|1|N|A|415
7QG8|1|N|U|416
7QG8|1|N|C|417

Current chains

Chain N

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L15