3D structure

PDB id
7QG8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the collided E. coli disome - VemP-stalled 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.97 Å

Loop

Sequence
UUUUGUAUAA
Length
10 nucleotides
Bulged bases
7QG8|1|N|A|574
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7QG8_055 not in the Motif Atlas
Geometric match to HL_5J7L_150
Geometric discrepancy: 0.0634
The information below is about HL_5J7L_150
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

7QG8|1|N|U|566
7QG8|1|N|U|567
7QG8|1|N|U|568
7QG8|1|N|U|569
7QG8|1|N|G|570
7QG8|1|N|U|571
7QG8|1|N|A|572
7QG8|1|N|U|573
7QG8|1|N|A|574
7QG8|1|N|A|575

Current chains

Chain N
23S rRNA

Nearby chains

Chain Q
50S ribosomal protein L3
Chain Y
50S ribosomal protein L15
Chain d
50S ribosomal protein L20
Chain e
50S ribosomal protein L21
Chain n
50S ribosomal protein L32

Coloring options:


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