3D structure

PDB id
7QG8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the collided E. coli disome - VemP-stalled 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.97 Å

Loop

Sequence
GGUCGGACAUC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7QG8_093 not in the Motif Atlas
Homologous match to HL_7RQB_055
Geometric discrepancy: 0.1518
The information below is about HL_7RQB_055
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_11805.3
Basepair signature
cWW-F-F-F-F-F-F-F-F-F
Number of instances in this motif group
3

Unit IDs

7QG8|1|N|G|2303
7QG8|1|N|G|2304
7QG8|1|N|U|2305
7QG8|1|N|C|2306
7QG8|1|N|G|2307
7QG8|1|N|G|2308
7QG8|1|N|A|2309
7QG8|1|N|C|2310
7QG8|1|N|A|2311
7QG8|1|N|U|2312
7QG8|1|N|C|2313

Current chains

Chain N
23S rRNA

Nearby chains

Chain M
Transfer RNA; tRNA
Chain O
5S ribosomal RNA; 5S rRNA
Chain S
50S ribosomal protein L5

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