HL_7QGN_047

3D structure

PDB id

7QGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.37 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

7QGN|1|N|A|311

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QGN_047 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1068

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7QGN|1|N|C|305
7QGN|1|N|U|306
7QGN|1|N|G|307
7QGN|1|N|G|308
7QGN|1|N|A|309
7QGN|1|N|A|310
7QGN|1|N|A|311
7QGN|1|N|G|312

Current chains

Chain N

23S rRNA

Nearby chains

Chain h

50S ribosomal protein L24