HL_7QGN_094

3D structure

PDB id

7QGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.37 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QGN_094 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.0964

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

7QGN|1|N|U|2324
7QGN|1|N|G|2325
7QGN|1|N|C|2326
7QGN|1|N|A|2327
7QGN|1|N|A|2328
7QGN|1|N|U|2329
7QGN|1|N|G|2330
7QGN|1|N|G|2331

Current chains

Chain N

23S rRNA

Nearby chains

Chain S

50S ribosomal protein L5

Chain Z

50S ribosomal protein L16

Chain j

50S ribosomal protein L27