HL_7QGN_104

3D structure

PDB id

7QGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.37 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7QGN|1|N|G|2751, 7QGN|1|N|C|2755

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QGN_104 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0853

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7QGN|1|N|C|2745
7QGN|1|N|U|2746
7QGN|1|N|G|2747
7QGN|1|N|A|2748
7QGN|1|N|A|2749
7QGN|1|N|A|2750
7QGN|1|N|G|2751
7QGN|1|N|C|2752
7QGN|1|N|A|2753
7QGN|1|N|U|2754
7QGN|1|N|C|2755
7QGN|1|N|U|2756
7QGN|1|N|A|2757
7QGN|1|N|A|2758
7QGN|1|N|G|2759

Current chains

Chain N

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L6

Chain W

50S ribosomal protein L13

Chain r

50S ribosomal protein L36