HL_7QGR_088

3D structure

PDB id

7QGR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7QGR|1|N|G|2250

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QGR_088 not in the Motif Atlas

Geometric match to HL_7A0S_052

Geometric discrepancy: 0.0954

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

7QGR|1|N|C|2248
7QGR|1|N|U|2249
7QGR|1|N|G|2250
7QGR|1|N|G|2251
7QGR|1|N|G|2252
7QGR|1|N|G|2253
7QGR|1|N|C|2254
7QGR|1|N|G|2255
7QGR|1|N|G|2256

Current chains

Chain N

23S rRNA

Nearby chains

Chain M

Transfer RNA; tRNA

Chain Z

50S ribosomal protein L16

Chain j

50S ribosomal protein L27