7QGR Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7QGR_001 | No text annotation | ||
| HL_7QGR_002 | No text annotation | ||
| HL_7QGR_113 | No text annotation | ||
| HL_7QGR_003 | GNRA | ||
| HL_7QGR_004 | GNRA | ||
| HL_7QGR_005 | No text annotation | ||
| HL_7QGR_006 | GNRA related | ||
| HL_7QGR_007 | GNRA | ||
| HL_7QGR_008 | No text annotation | ||
| HL_7QGR_009 | UNCG | ||
| HL_7QGR_010 | GNRA | ||
| HL_7QGR_011 | UNCG | ||
| HL_7QGR_012 | GNRA wlth extra near cWW | ||
| HL_7QGR_013 | No text annotation | ||
| HL_7QGR_014 | GNRA-like with tWH | ||
| HL_7QGR_015 | No text annotation | ||
| HL_7QGR_016 | GNRA | ||
| HL_7QGR_017 | No text annotation | ||
| HL_7QGR_018 | Externally structured | ||
| HL_7QGR_019 | GNRA | ||
| HL_7QGR_020 | GNRA | ||
| HL_7QGR_021 | No text annotation | ||
| HL_7QGR_022 | No text annotation | ||
| HL_7QGR_110 | No text annotation | ||
| HL_7QGR_023 | No text annotation | ||
| HL_7QGR_024 | GNRA | ||
| HL_7QGR_025 | T-loop related | ||
| HL_7QGR_026 | No text annotation | ||
| HL_7QGR_027 | GNRA | ||
| HL_7QGR_028 | GNRA | ||
| HL_7QGR_029 | T-loop with 3 stacked bulged bases | ||
| HL_7QGR_030 | No text annotation | ||
| HL_7QGR_031 | UNCG | ||
| HL_7QGR_032 | GNRA | ||
| HL_7QGR_033 | No text annotation | ||
| HL_7QGR_034 | tRNA anticodon loop | ||
| HL_7QGR_035 | T-loop with 2 stacked bulged bases | ||
| HL_7QGR_036 | No text annotation | ||
| HL_7QGR_037 | No text annotation | ||
| HL_7QGR_038 | No text annotation | ||
| HL_7QGR_039 | No text annotation | ||
| HL_7QGR_040 | No text annotation | ||
| HL_7QGR_041 | No text annotation | ||
| HL_7QGR_042 | No text annotation | ||
| HL_7QGR_043 | No text annotation | ||
| HL_7QGR_044 | T-loop with 1 bulged base | ||
| HL_7QGR_045 | No text annotation | ||
| HL_7QGR_046 | T-loop with unstacked turn | ||
| HL_7QGR_047 | No text annotation | ||
| HL_7QGR_048 | Pseudoknot geometry | ||
| HL_7QGR_049 | GNRA | ||
| HL_7QGR_050 | GNRA | ||
| HL_7QGR_051 | No text annotation | ||
| HL_7QGR_052 | T-loop with 2 stacked bulged bases | ||
| HL_7QGR_053 | No text annotation | ||
| HL_7QGR_054 | GNRA | ||
| HL_7QGR_055 | No text annotation | ||
| HL_7QGR_056 | GNRA wlth tandem sheared | ||
| HL_7QGR_057 | No text annotation | ||
| HL_7QGR_058 | UNCG variation | ||
| HL_7QGR_059 | No text annotation | ||
| HL_7QGR_060 | No text annotation | ||
| HL_7QGR_061 | GNRA | ||
| HL_7QGR_062 | No text annotation | ||
| HL_7QGR_063 | No text annotation | ||
| HL_7QGR_064 | No text annotation | ||
| HL_7QGR_065 | No text annotation | ||
| HL_7QGR_066 | GNRA | ||
| HL_7QGR_067 | T-loop with 2 stacked bulged bases | ||
| HL_7QGR_068 | Pseudoknot geometry with 3' bulge | ||
| HL_7QGR_069 | GNRA | ||
| HL_7QGR_070 | No text annotation | ||
| HL_7QGR_071 | Mini UNCG | ||
| HL_7QGR_072 | Pseudoknot geometry with 3' bulge | ||
| HL_7QGR_073 | UNCG | ||
| HL_7QGR_074 | No text annotation | ||
| HL_7QGR_075 | No text annotation | ||
| HL_7QGR_076 | GNRA | ||
| HL_7QGR_077 | No text annotation | ||
| HL_7QGR_078 | No text annotation | ||
| HL_7QGR_079 | No text annotation | ||
| HL_7QGR_080 | No text annotation | ||
| HL_7QGR_081 | GNRA related | ||
| HL_7QGR_082 | No text annotation | ||
| HL_7QGR_083 | No text annotation | ||
| HL_7QGR_084 | No text annotation | ||
| HL_7QGR_085 | No text annotation | ||
| HL_7QGR_086 | No text annotation | ||
| HL_7QGR_087 | No text annotation | ||
| HL_7QGR_088 | No text annotation | ||
| HL_7QGR_089 | No text annotation | ||
| HL_7QGR_090 | No text annotation | ||
| HL_7QGR_111 | No text annotation | ||
| HL_7QGR_091 | Pseudoknot geometry | ||
| HL_7QGR_092 | GNRA | ||
| HL_7QGR_093 | GNRA | ||
| HL_7QGR_094 | No text annotation | ||
| HL_7QGR_095 | No text annotation | ||
| HL_7QGR_096 | GNRA variation | ||
| HL_7QGR_097 | No text annotation | ||
| HL_7QGR_098 | GNRA | ||
| HL_7QGR_099 | GNRA | ||
| HL_7QGR_100 | Ribsomal LSU H95 | ||
| HL_7QGR_101 | No text annotation | ||
| HL_7QGR_102 | Mini UNCG | ||
| HL_7QGR_103 | No text annotation | ||
| HL_7QGR_104 | GNRA | ||
| HL_7QGR_112 | No text annotation | ||
| HL_7QGR_105 | No text annotation | ||
| HL_7QGR_106 | Mini UNCG | ||
| HL_7QGR_107 | tRNA D-loop | ||
| HL_7QGR_108 | tRNA anticodon loop | ||
| HL_7QGR_109 | T-loop with 2 stacked bulged bases |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7QGR_001 | Single bulged G | ||
| IL_7QGR_002 | Single bulged A | ||
| IL_7QGR_003 | No text annotation | ||
| IL_7QGR_004 | Minor groove platform | ||
| IL_7QGR_005 | Multiple bulged bases | ||
| IL_7QGR_006 | Minor groove platform with extra cWW | ||
| IL_7QGR_007 | Minor groove platform | ||
| IL_7QGR_008 | Single bulged G | ||
| IL_7QGR_009 | Isolated non-canonical cWW pair | ||
| IL_7QGR_010 | Minor groove platform related | ||
| IL_7QGR_011 | Isolated cWH basepair | ||
| IL_7QGR_012 | tWH-tWH-tHW-tHW | ||
| IL_7QGR_013 | Minor groove platform | ||
| IL_7QGR_014 | Kink-turn with non-sequential stacking | ||
| IL_7QGR_015 | No text annotation | ||
| IL_7QGR_016 | C-loop | ||
| IL_7QGR_017 | Single bulged U | ||
| IL_7QGR_018 | C-loop | ||
| IL_7QGR_019 | Single bulged G | ||
| IL_7QGR_020 | No text annotation | ||
| IL_7QGR_021 | No text annotation | ||
| IL_7QGR_022 | tSH-tHW-tWW | ||
| IL_7QGR_023 | No text annotation | ||
| IL_7QGR_024 | SSU/LSU pseudoknot | ||
| IL_7QGR_025 | Kink-turn related | ||
| IL_7QGR_026 | No text annotation | ||
| IL_7QGR_027 | tSH-tHW-tHS | ||
| IL_7QGR_028 | Major groove platform | ||
| IL_7QGR_029 | Major groove minor groove platform; mini C-loop | ||
| IL_7QGR_030 | No text annotation | ||
| IL_7QGR_031 | Major groove platform; stack outside cWW | ||
| IL_7QGR_032 | Single stack bend | ||
| IL_7QGR_033 | Tandem non-canonical cWW pairs | ||
| IL_7QGR_179 | Triple non-canonical cWW pairs | ||
| IL_7QGR_034 | No text annotation | ||
| IL_7QGR_035 | Kink-turn | ||
| IL_7QGR_036 | Left turn | ||
| IL_7QGR_037 | tSH-tHW-tHS | ||
| IL_7QGR_038 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_7QGR_039 | Single bulged A | ||
| IL_7QGR_040 | Single bulged G | ||
| IL_7QGR_041 | Minor groove platform | ||
| IL_7QGR_042 | Minor groove platform | ||
| IL_7QGR_043 | Minor groove platform | ||
| IL_7QGR_044 | Single stack bend | ||
| IL_7QGR_045 | Single stack bend | ||
| IL_7QGR_046 | Single bulged U | ||
| IL_7QGR_047 | Tandem non-canonical cWW pairs | ||
| IL_7QGR_180 | Isolated cWS basepair | ||
| IL_7QGR_048 | Minor groove platform | ||
| IL_7QGR_049 | Single bulged A | ||
| IL_7QGR_050 | Isolated non-canonical cWW pair | ||
| IL_7QGR_051 | No text annotation | ||
| IL_7QGR_052 | Minor groove platform | ||
| IL_7QGR_053 | No text annotation | ||
| IL_7QGR_054 | No text annotation | ||
| IL_7QGR_055 | 180 degree turn | ||
| IL_7QGR_056 | Double sheared with non-canonical cWW | ||
| IL_7QGR_057 | No text annotation | ||
| IL_7QGR_058 | No text annotation | ||
| IL_7QGR_059 | No text annotation | ||
| IL_7QGR_060 | Isolated non-canonical cWW pair | ||
| IL_7QGR_061 | Decoding loop related | ||
| IL_7QGR_062 | Isolated non-canonical cWW pair | ||
| IL_7QGR_063 | Double sheared | ||
| IL_7QGR_064 | Triple sheared related | ||
| IL_7QGR_065 | Single bulged A | ||
| IL_7QGR_066 | No text annotation | ||
| IL_7QGR_067 | Triple sheared with non-canonical cWW | ||
| IL_7QGR_068 | Single bulged A | ||
| IL_7QGR_069 | Minor groove platform | ||
| IL_7QGR_070 | No text annotation | ||
| IL_7QGR_071 | Single stack bend | ||
| IL_7QGR_072 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7QGR_073 | 7x6 Sarcin-Ricin; G-bulge | ||
| IL_7QGR_074 | No text annotation | ||
| IL_7QGR_075 | No text annotation | ||
| IL_7QGR_076 | No text annotation | ||
| IL_7QGR_077 | No text annotation | ||
| IL_7QGR_078 | Double sheared | ||
| IL_7QGR_079 | Isolated non-canonical cWW pair | ||
| IL_7QGR_080 | AAA cross-strand stack | ||
| IL_7QGR_081 | No text annotation | ||
| IL_7QGR_082 | tHW-tHW cross-strand stack | ||
| IL_7QGR_083 | Single bulged A | ||
| IL_7QGR_084 | Single bulged G | ||
| IL_7QGR_085 | Triple sheared | ||
| IL_7QGR_086 | Major groove platform | ||
| IL_7QGR_087 | Multiple bulged bases | ||
| IL_7QGR_088 | 90 degree turn | ||
| IL_7QGR_181 | No text annotation | ||
| IL_7QGR_089 | Stack outside cWW | ||
| IL_7QGR_090 | Single stack bend | ||
| IL_7QGR_091 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_7QGR_092 | Single bulged G | ||
| IL_7QGR_093 | C-loop with bulged stacked A's | ||
| IL_7QGR_094 | Isolated non-canonical cWW pair | ||
| IL_7QGR_095 | Double sheared with non-canonical cWW | ||
| IL_7QGR_096 | No text annotation | ||
| IL_7QGR_097 | Single bulged C | ||
| IL_7QGR_098 | UAA/GAN | ||
| IL_7QGR_099 | SSU/LSU pseudoknot | ||
| IL_7QGR_100 | Single bulged U | ||
| IL_7QGR_101 | Kink-turn related | ||
| IL_7QGR_102 | No text annotation | ||
| IL_7QGR_103 | Isolated non-canonical cWW pair | ||
| IL_7QGR_104 | Tandem non-canonical cWW pairs | ||
| IL_7QGR_105 | Kink-turn | ||
| IL_7QGR_182 | No text annotation | ||
| IL_7QGR_106 | No text annotation | ||
| IL_7QGR_107 | Major groove platform | ||
| IL_7QGR_108 | Isolated cWS basepair | ||
| IL_7QGR_109 | No text annotation | ||
| IL_7QGR_110 | Kink-turn | ||
| IL_7QGR_111 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7QGR_112 | Major groove platform; stack outside cWW | ||
| IL_7QGR_113 | Major groove minor groove platform with tHH | ||
| IL_7QGR_114 | UAA/GAN | ||
| IL_7QGR_115 | tSH-tHW-tHS | ||
| IL_7QGR_116 | No text annotation | ||
| IL_7QGR_117 | UAA/GAN | ||
| IL_7QGR_118 | Tandem non-canonical cWW pairs | ||
| IL_7QGR_119 | tSH-tHW | ||
| IL_7QGR_120 | Single bulged U | ||
| IL_7QGR_121 | No text annotation | ||
| IL_7QGR_122 | tSH-tHW-tHS | ||
| IL_7QGR_123 | 180 degree turn | ||
| IL_7QGR_124 | Single bulged A | ||
| IL_7QGR_125 | UAA/GAN variation | ||
| IL_7QGR_126 | No text annotation | ||
| IL_7QGR_127 | Isolated tWW turn | ||
| IL_7QGR_128 | Major groove platform; stack outside cWW | ||
| IL_7QGR_183 | No text annotation | ||
| IL_7QGR_129 | Intercalated tWH | ||
| IL_7QGR_130 | tSH-tSH-tHH-tHS | ||
| IL_7QGR_131 | 6x5 Sarcin-Ricin; G-bulge | ||
| IL_7QGR_132 | Triple sheared | ||
| IL_7QGR_133 | Single bulged C | ||
| IL_7QGR_134 | Single bulged A | ||
| IL_7QGR_135 | Kink-turn related | ||
| IL_7QGR_136 | Minor groove platform, major groove intercalation | ||
| IL_7QGR_137 | Major groove intercalation | ||
| IL_7QGR_138 | Major groove minor groove platform; mini C-loop | ||
| IL_7QGR_184 | No text annotation | ||
| IL_7QGR_139 | UAA/GAN related | ||
| IL_7QGR_140 | Bulged stacked bases | ||
| IL_7QGR_141 | No text annotation | ||
| IL_7QGR_142 | Major groove platform | ||
| IL_7QGR_143 | No text annotation | ||
| IL_7QGR_144 | Single bulged U | ||
| IL_7QGR_145 | Minor groove platform | ||
| IL_7QGR_146 | Isolated tHS basepair with bulges | ||
| IL_7QGR_147 | Isolated non-canonical cWW pair | ||
| IL_7QGR_185 | Other IL | ||
| IL_7QGR_148 | Isolated non-canonical cWW pair | ||
| IL_7QGR_149 | No text annotation | ||
| IL_7QGR_186 | No text annotation | ||
| IL_7QGR_187 | No text annotation | ||
| IL_7QGR_150 | Single bulged U | ||
| IL_7QGR_151 | Double sheared | ||
| IL_7QGR_152 | Single bulged U | ||
| IL_7QGR_153 | Single stack bend | ||
| IL_7QGR_154 | Major groove platform | ||
| IL_7QGR_155 | Major groove platform | ||
| IL_7QGR_156 | Major groove minor groove platform with extra cWW | ||
| IL_7QGR_157 | Double sheared with non-canonical cWW | ||
| IL_7QGR_158 | Major groove platform | ||
| IL_7QGR_159 | Isolated non-canonical cWW with bulges | ||
| IL_7QGR_160 | No text annotation | ||
| IL_7QGR_161 | Major groove platform with intercalation | ||
| IL_7QGR_162 | Single bulged A | ||
| IL_7QGR_163 | tSH-tHS-tHW | ||
| IL_7QGR_164 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_7QGR_165 | C-loop | ||
| IL_7QGR_166 | UAA/GAN related, with intercalation | ||
| IL_7QGR_167 | Multiple bulged bases | ||
| IL_7QGR_168 | UAA/GAN with extra cWW | ||
| IL_7QGR_169 | Single bulged A | ||
| IL_7QGR_170 | No text annotation | ||
| IL_7QGR_171 | Major groove intercalation | ||
| IL_7QGR_172 | Multiple bulged bases with non-canonical cWW | ||
| IL_7QGR_173 | tHS double platform | ||
| IL_7QGR_174 | Major groove intercalation | ||
| IL_7QGR_175 | No text annotation | ||
| IL_7QGR_176 | Major groove minor groove platform; mini C-loop | ||
| IL_7QGR_177 | Symmetric double minor groove platform | ||
| IL_7QGR_178 | Bacterial 5S Loop E |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7QGR_001 | No text annotation | ||
| J3_7QGR_028 | No text annotation | ||
| J3_7QGR_002 | No text annotation | ||
| J3_7QGR_029 | No text annotation | ||
| J3_7QGR_003 | No text annotation | ||
| J3_7QGR_004 | No text annotation | ||
| J3_7QGR_005 | No text annotation | ||
| J3_7QGR_006 | No text annotation | ||
| J3_7QGR_007 | No text annotation | ||
| J3_7QGR_008 | No text annotation | ||
| J3_7QGR_030 | No text annotation | ||
| J3_7QGR_037 | No text annotation | ||
| J3_7QGR_009 | No text annotation | ||
| J3_7QGR_010 | No text annotation | ||
| J3_7QGR_031 | No text annotation | ||
| J3_7QGR_011 | No text annotation | ||
| J3_7QGR_012 | No text annotation | ||
| J3_7QGR_032 | No text annotation | ||
| J3_7QGR_013 | No text annotation | ||
| J3_7QGR_014 | No text annotation | ||
| J3_7QGR_033 | No text annotation | ||
| J3_7QGR_015 | No text annotation | ||
| J3_7QGR_034 | No text annotation | ||
| J3_7QGR_016 | No text annotation | ||
| J3_7QGR_017 | No text annotation | ||
| J3_7QGR_018 | No text annotation | ||
| J3_7QGR_019 | No text annotation | ||
| J3_7QGR_020 | No text annotation | ||
| J3_7QGR_021 | No text annotation | ||
| J3_7QGR_035 | No text annotation | ||
| J3_7QGR_022 | No text annotation | ||
| J3_7QGR_036 | No text annotation | ||
| J3_7QGR_023 | No text annotation | ||
| J3_7QGR_024 | No text annotation | ||
| J3_7QGR_025 | No text annotation | ||
| J3_7QGR_026 | No text annotation | ||
| J3_7QGR_027 | No text annotation | ||
| J4_7QGR_001 | No text annotation | ||
| J4_7QGR_002 | No text annotation | ||
| J4_7QGR_003 | No text annotation | ||
| J4_7QGR_004 | tRNA junction | ||
| J4_7QGR_005 | No text annotation | ||
| J4_7QGR_006 | No text annotation | ||
| J4_7QGR_007 | No text annotation | ||
| J4_7QGR_008 | No text annotation | ||
| J4_7QGR_009 | No text annotation | ||
| J4_7QGR_010 | No text annotation | ||
| J4_7QGR_011 | No text annotation | ||
| J4_7QGR_012 | No text annotation | ||
| J4_7QGR_013 | No text annotation | ||
| J4_7QGR_014 | No text annotation | ||
| J4_7QGR_015 | No text annotation | ||
| J4_7QGR_016 | tRNA junction | ||
| J5_7QGR_001 | No text annotation | ||
| J5_7QGR_002 | No text annotation | ||
| J5_7QGR_003 | No text annotation | ||
| J5_7QGR_004 | No text annotation | ||
| J5_7QGR_005 | No text annotation | ||
| J5_7QGR_006 | No text annotation | ||
| J5_7QGR_007 | No text annotation | ||
| J5_7QGR_008 | No text annotation | ||
| J6_7QGR_001 | No text annotation | ||
| J6_7QGR_002 | No text annotation | ||
| J7_7QGR_001 | No text annotation | ||
| J7_7QGR_002 | No text annotation |
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