HL_7QGU_109

3D structure

PDB id

7QGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.75 Å

Loop

Sequence

GGCUCGUCC

Length

9 nucleotides

Bulged bases

7QGU|1|A|C|1364, 7QGU|1|A|U|1368

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QGU_109 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3241

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05426.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

7QGU|1|A|G|1362
7QGU|1|A|G|1363
7QGU|1|A|C|1364
7QGU|1|A|U|1365
7QGU|1|A|C|1366
7QGU|1|A|G|1367
7QGU|1|A|U|1368
7QGU|1|A|C|1369
7QGU|1|A|C|1370

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

YqzJ

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22