7QGU Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7QGU_001 | No text annotation | ||
| HL_7QGU_002 | Pseudoknot geometry | ||
| HL_7QGU_003 | No text annotation | ||
| HL_7QGU_004 | GNRA wlth tandem sheared | ||
| HL_7QGU_005 | No text annotation | ||
| HL_7QGU_006 | No text annotation | ||
| HL_7QGU_007 | No text annotation | ||
| HL_7QGU_008 | No text annotation | ||
| HL_7QGU_009 | No text annotation | ||
| HL_7QGU_010 | T-loop with 1 bulged base | ||
| HL_7QGU_011 | No text annotation | ||
| HL_7QGU_012 | T-loop with unstacked turn | ||
| HL_7QGU_013 | No text annotation | ||
| HL_7QGU_014 | Pseudoknot geometry | ||
| HL_7QGU_015 | GNRA | ||
| HL_7QGU_016 | GNRA | ||
| HL_7QGU_017 | No text annotation | ||
| HL_7QGU_018 | T-loop with 2 stacked bulged bases | ||
| HL_7QGU_019 | No text annotation | ||
| HL_7QGU_020 | GNRA | ||
| HL_7QGU_021 | No text annotation | ||
| HL_7QGU_022 | GNRA wlth tandem sheared | ||
| HL_7QGU_023 | No text annotation | ||
| HL_7QGU_024 | No text annotation | ||
| HL_7QGU_025 | No text annotation | ||
| HL_7QGU_026 | No text annotation | ||
| HL_7QGU_027 | GNRA | ||
| HL_7QGU_108 | No text annotation | ||
| HL_7QGU_028 | No text annotation | ||
| HL_7QGU_029 | No text annotation | ||
| HL_7QGU_030 | GNRA wlth tandem sheared | ||
| HL_7QGU_031 | Mini UNCG | ||
| HL_7QGU_032 | GNRA | ||
| HL_7QGU_033 | T-loop with 2 stacked bulged bases | ||
| HL_7QGU_109 | No text annotation | ||
| HL_7QGU_034 | Pseudoknot geometry with 3' bulge | ||
| HL_7QGU_035 | GNRA | ||
| HL_7QGU_036 | No text annotation | ||
| HL_7QGU_037 | UNCG variation | ||
| HL_7QGU_038 | Pseudoknot geometry with 3' bulge | ||
| HL_7QGU_039 | No text annotation | ||
| HL_7QGU_040 | Mini UNCG | ||
| HL_7QGU_041 | No text annotation | ||
| HL_7QGU_042 | GNRA | ||
| HL_7QGU_043 | UNCG | ||
| HL_7QGU_044 | No text annotation | ||
| HL_7QGU_045 | No text annotation | ||
| HL_7QGU_046 | No text annotation | ||
| HL_7QGU_047 | GNRA related | ||
| HL_7QGU_048 | GNRA | ||
| HL_7QGU_049 | No text annotation | ||
| HL_7QGU_050 | No text annotation | ||
| HL_7QGU_051 | No text annotation | ||
| HL_7QGU_052 | No text annotation | ||
| HL_7QGU_053 | No text annotation | ||
| HL_7QGU_054 | No text annotation | ||
| HL_7QGU_055 | No text annotation | ||
| HL_7QGU_056 | No text annotation | ||
| HL_7QGU_110 | No text annotation | ||
| HL_7QGU_057 | Pseudoknot geometry | ||
| HL_7QGU_058 | GNRA with extra cWW | ||
| HL_7QGU_059 | GNRA | ||
| HL_7QGU_060 | No text annotation | ||
| HL_7QGU_061 | No text annotation | ||
| HL_7QGU_062 | No text annotation | ||
| HL_7QGU_063 | No text annotation | ||
| HL_7QGU_064 | GNRA | ||
| HL_7QGU_065 | GNRA | ||
| HL_7QGU_066 | Ribsomal LSU H95 | ||
| HL_7QGU_067 | No text annotation | ||
| HL_7QGU_068 | GNRA related | ||
| HL_7QGU_069 | No text annotation | ||
| HL_7QGU_070 | GNRA | ||
| HL_7QGU_071 | No text annotation | ||
| HL_7QGU_072 | Mini UNCG | ||
| HL_7QGU_073 | No text annotation | ||
| HL_7QGU_074 | No text annotation | ||
| HL_7QGU_075 | GNRA | ||
| HL_7QGU_076 | No text annotation | ||
| HL_7QGU_077 | UNCG | ||
| HL_7QGU_078 | GNRA related | ||
| HL_7QGU_079 | GNRA | ||
| HL_7QGU_080 | No text annotation | ||
| HL_7QGU_081 | UNCG | ||
| HL_7QGU_082 | GNRA | ||
| HL_7QGU_083 | UNCG | ||
| HL_7QGU_084 | GNRA | ||
| HL_7QGU_085 | No text annotation | ||
| HL_7QGU_086 | GNRA-like with tWH | ||
| HL_7QGU_087 | No text annotation | ||
| HL_7QGU_088 | GNRA | ||
| HL_7QGU_089 | No text annotation | ||
| HL_7QGU_090 | No text annotation | ||
| HL_7QGU_091 | GNRA | ||
| HL_7QGU_092 | GNRA | ||
| HL_7QGU_093 | No text annotation | ||
| HL_7QGU_094 | GNRA | ||
| HL_7QGU_095 | UNCG variation | ||
| HL_7QGU_096 | GNRA | ||
| HL_7QGU_097 | T-loop related | ||
| HL_7QGU_098 | T-loop related | ||
| HL_7QGU_099 | GNRA | ||
| HL_7QGU_100 | GNRA | ||
| HL_7QGU_101 | T-loop with 3 stacked bulged bases | ||
| HL_7QGU_102 | No text annotation | ||
| HL_7QGU_103 | No text annotation | ||
| HL_7QGU_104 | GNRA | ||
| HL_7QGU_105 | tRNA D-loop | ||
| HL_7QGU_106 | No text annotation | ||
| HL_7QGU_107 | T-loop with 2 stacked bulged bases |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7QGU_001 | Triple sheared with non-canonical cWW | ||
| IL_7QGU_002 | Single bulged A | ||
| IL_7QGU_194 | Minor groove platform | ||
| IL_7QGU_003 | No text annotation | ||
| IL_7QGU_004 | Kink-turn | ||
| IL_7QGU_005 | Single bulged A | ||
| IL_7QGU_006 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7QGU_007 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7QGU_008 | Major groove minor groove platform with extra cWW | ||
| IL_7QGU_195 | Major groove minor groove platform; mini C-loop | ||
| IL_7QGU_009 | No text annotation | ||
| IL_7QGU_010 | No text annotation | ||
| IL_7QGU_011 | No text annotation | ||
| IL_7QGU_012 | Single bulged A | ||
| IL_7QGU_013 | No text annotation | ||
| IL_7QGU_014 | Double sheared | ||
| IL_7QGU_015 | Isolated non-canonical cWW pair | ||
| IL_7QGU_016 | Isolated non-canonical cWW pair | ||
| IL_7QGU_017 | AAA cross-strand stack | ||
| IL_7QGU_018 | Isolated non-canonical cWW pair | ||
| IL_7QGU_019 | tHW-tHW cross-strand stack | ||
| IL_7QGU_020 | Single bulged A | ||
| IL_7QGU_021 | Single bulged G | ||
| IL_7QGU_022 | Triple sheared | ||
| IL_7QGU_023 | Major groove platform | ||
| IL_7QGU_024 | Multiple bulged bases | ||
| IL_7QGU_025 | Single stack bend | ||
| IL_7QGU_196 | No text annotation | ||
| IL_7QGU_026 | No text annotation | ||
| IL_7QGU_183 | Single stack bend | ||
| IL_7QGU_027 | No text annotation | ||
| IL_7QGU_028 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
| IL_7QGU_029 | Minor groove platform | ||
| IL_7QGU_184 | C-loop | ||
| IL_7QGU_030 | No text annotation | ||
| IL_7QGU_031 | Minor groove platform with extra cWW | ||
| IL_7QGU_185 | Double sheared with non-canonical cWW | ||
| IL_7QGU_032 | Minor groove platform | ||
| IL_7QGU_033 | Single bulged A | ||
| IL_7QGU_034 | Isolated non-canonical cWW pair | ||
| IL_7QGU_035 | Single bulged C | ||
| IL_7QGU_036 | UAA/GAN | ||
| IL_7QGU_037 | SSU/LSU pseudoknot | ||
| IL_7QGU_038 | Single bulged U | ||
| IL_7QGU_039 | Kink-turn related | ||
| IL_7QGU_040 | No text annotation | ||
| IL_7QGU_041 | Isolated non-canonical cWW pair | ||
| IL_7QGU_042 | Kink-turn | ||
| IL_7QGU_043 | No text annotation | ||
| IL_7QGU_044 | No text annotation | ||
| IL_7QGU_045 | Isolated cWS basepair | ||
| IL_7QGU_197 | No text annotation | ||
| IL_7QGU_046 | No text annotation | ||
| IL_7QGU_047 | Kink-turn | ||
| IL_7QGU_048 | Intercalated cWW | ||
| IL_7QGU_049 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7QGU_050 | Major groove platform; stack outside cWW | ||
| IL_7QGU_051 | C-loop | ||
| IL_7QGU_052 | UAA/GAN | ||
| IL_7QGU_053 | tSH-tHW-tHS | ||
| IL_7QGU_054 | Minor groove platform | ||
| IL_7QGU_055 | No text annotation | ||
| IL_7QGU_056 | Other IL | ||
| IL_7QGU_057 | No text annotation | ||
| IL_7QGU_058 | tSH-tHW | ||
| IL_7QGU_059 | Isolated non-canonical cWW pair | ||
| IL_7QGU_060 | Isolated non-canonical cWW pair | ||
| IL_7QGU_186 | No text annotation | ||
| IL_7QGU_061 | No text annotation | ||
| IL_7QGU_062 | No text annotation | ||
| IL_7QGU_063 | No text annotation | ||
| IL_7QGU_064 | Single bulged A | ||
| IL_7QGU_065 | UAA/GAN variation | ||
| IL_7QGU_066 | No text annotation | ||
| IL_7QGU_067 | Isolated tWW turn | ||
| IL_7QGU_068 | Major groove platform | ||
| IL_7QGU_187 | No text annotation | ||
| IL_7QGU_069 | Intercalated tWH | ||
| IL_7QGU_070 | tSH-tSH-tHH-tHS | ||
| IL_7QGU_071 | No text annotation | ||
| IL_7QGU_072 | Single bulged A | ||
| IL_7QGU_073 | Kink-turn related | ||
| IL_7QGU_074 | Minor groove platform, major groove intercalation | ||
| IL_7QGU_075 | Major groove intercalation | ||
| IL_7QGU_076 | Major groove minor groove platform; mini C-loop | ||
| IL_7QGU_077 | UAA/GAN with extra stack | ||
| IL_7QGU_078 | Triple sheared | ||
| IL_7QGU_079 | UAA/GAN related | ||
| IL_7QGU_080 | Bulged stacked bases | ||
| IL_7QGU_081 | No text annotation | ||
| IL_7QGU_082 | Major groove platform | ||
| IL_7QGU_083 | No text annotation | ||
| IL_7QGU_084 | Single bulged U | ||
| IL_7QGU_085 | Minor groove platform | ||
| IL_7QGU_086 | Isolated tHS basepair with bulges | ||
| IL_7QGU_188 | Isolated non-canonical cWW pair | ||
| IL_7QGU_087 | Tandem non-canonical cWW pairs | ||
| IL_7QGU_088 | Isolated non-canonical cWW pair | ||
| IL_7QGU_089 | No text annotation | ||
| IL_7QGU_090 | No text annotation | ||
| IL_7QGU_091 | Kink-turn | ||
| IL_7QGU_092 | Single bulged G | ||
| IL_7QGU_093 | Isolated tHS basepair with bulges | ||
| IL_7QGU_094 | Double sheared | ||
| IL_7QGU_095 | Single bulged U | ||
| IL_7QGU_096 | Single stack bend | ||
| IL_7QGU_097 | Major groove platform | ||
| IL_7QGU_098 | Major groove platform | ||
| IL_7QGU_099 | Major groove minor groove platform with extra cWW | ||
| IL_7QGU_100 | Double sheared with non-canonical cWW | ||
| IL_7QGU_101 | Major groove platform | ||
| IL_7QGU_102 | Isolated non-canonical cWW with bulges | ||
| IL_7QGU_103 | No text annotation | ||
| IL_7QGU_104 | Major groove platform with intercalation | ||
| IL_7QGU_105 | Single bulged A | ||
| IL_7QGU_106 | tSH-tHS-tHW | ||
| IL_7QGU_107 | Sarcin-Ricin target in LSU H95; G-bulge | ||
| IL_7QGU_108 | C-loop | ||
| IL_7QGU_109 | UAA/GAN related, with intercalation | ||
| IL_7QGU_110 | Multiple bulged bases | ||
| IL_7QGU_111 | UAA/GAN with extra cWW | ||
| IL_7QGU_112 | Major groove intercalation | ||
| IL_7QGU_113 | No text annotation | ||
| IL_7QGU_114 | tHS double platform | ||
| IL_7QGU_115 | Major groove intercalation | ||
| IL_7QGU_116 | No text annotation | ||
| IL_7QGU_117 | Major groove minor groove platform; mini C-loop | ||
| IL_7QGU_118 | Symmetric double minor groove platform | ||
| IL_7QGU_119 | Bacterial 5S Loop E | ||
| IL_7QGU_120 | Isolated non-canonical cWW pair | ||
| IL_7QGU_121 | Single bulged G | ||
| IL_7QGU_122 | Single bulged A | ||
| IL_7QGU_123 | No text annotation | ||
| IL_7QGU_124 | Minor groove platform | ||
| IL_7QGU_125 | Multiple bulged bases | ||
| IL_7QGU_126 | Isolated non-canonical cWW pair | ||
| IL_7QGU_127 | Double sheared with non-canonical cWW | ||
| IL_7QGU_128 | Isolated non-canonical cWW pair | ||
| IL_7QGU_198 | Multiple bulged bases | ||
| IL_7QGU_129 | No text annotation | ||
| IL_7QGU_130 | tWH-tWH-tHW-tHW | ||
| IL_7QGU_131 | Kink-turn with non-sequential stacking | ||
| IL_7QGU_189 | No text annotation | ||
| IL_7QGU_132 | No text annotation | ||
| IL_7QGU_133 | C-loop | ||
| IL_7QGU_134 | C-loop | ||
| IL_7QGU_135 | Single bulged G | ||
| IL_7QGU_136 | No text annotation | ||
| IL_7QGU_137 | Major groove minor groove platform; mini C-loop | ||
| IL_7QGU_190 | No text annotation | ||
| IL_7QGU_191 | Single stack bend | ||
| IL_7QGU_138 | SSU/LSU pseudoknot | ||
| IL_7QGU_139 | Kink-turn related | ||
| IL_7QGU_140 | No text annotation | ||
| IL_7QGU_141 | tSH-tHW-tHS | ||
| IL_7QGU_142 | Major groove platform | ||
| IL_7QGU_143 | Major groove minor groove platform; mini C-loop | ||
| IL_7QGU_144 | Single bulged U | ||
| IL_7QGU_145 | No text annotation | ||
| IL_7QGU_146 | Major groove platform; stack outside cWW | ||
| IL_7QGU_147 | No text annotation | ||
| IL_7QGU_148 | Tandem non-canonical cWW pairs | ||
| IL_7QGU_192 | Triple non-canonical cWW pairs | ||
| IL_7QGU_149 | No text annotation | ||
| IL_7QGU_150 | Kink-turn | ||
| IL_7QGU_151 | Left turn | ||
| IL_7QGU_152 | tSH-tHW-tHS | ||
| IL_7QGU_153 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_7QGU_154 | Isolated non-canonical cWW pair | ||
| IL_7QGU_199 | Single bulged A | ||
| IL_7QGU_155 | Single bulged G | ||
| IL_7QGU_156 | Minor groove platform | ||
| IL_7QGU_157 | Minor groove platform | ||
| IL_7QGU_158 | Minor groove platform | ||
| IL_7QGU_159 | Single stack bend | ||
| IL_7QGU_193 | No text annotation | ||
| IL_7QGU_160 | Single bulged U | ||
| IL_7QGU_161 | Isolated cWS basepair | ||
| IL_7QGU_162 | Minor groove platform | ||
| IL_7QGU_163 | Single bulged A | ||
| IL_7QGU_164 | Isolated non-canonical cWW pair | ||
| IL_7QGU_200 | Minor groove platform | ||
| IL_7QGU_165 | No text annotation | ||
| IL_7QGU_166 | Minor groove platform | ||
| IL_7QGU_167 | No text annotation | ||
| IL_7QGU_168 | No text annotation | ||
| IL_7QGU_169 | 180 degree turn | ||
| IL_7QGU_170 | Double sheared with non-canonical cWW | ||
| IL_7QGU_171 | No text annotation | ||
| IL_7QGU_172 | No text annotation | ||
| IL_7QGU_173 | No text annotation | ||
| IL_7QGU_174 | Isolated non-canonical cWW pair | ||
| IL_7QGU_175 | Decoding loop related | ||
| IL_7QGU_176 | Isolated non-canonical cWW pair | ||
| IL_7QGU_177 | Double sheared | ||
| IL_7QGU_178 | Tandem non-canonical cWW pairs | ||
| IL_7QGU_179 | Triple sheared related | ||
| IL_7QGU_180 | Isolated non-canonical cWW pair | ||
| IL_7QGU_181 | Isolated tHS basepair with bulges | ||
| IL_7QGU_182 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J5_7QGU_006 | 1/A/2086:2093, 1/A/2475:2482, 1/A/2529:2535, 1/A/2612:2617, 1/A/2635:2640 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7QGU_001 | No text annotation | ||
| J3_7QGU_027 | No text annotation | ||
| J3_7QGU_028 | No text annotation | ||
| J3_7QGU_002 | No text annotation | ||
| J3_7QGU_041 | No text annotation | ||
| J3_7QGU_003 | No text annotation | ||
| J3_7QGU_004 | No text annotation | ||
| J3_7QGU_029 | No text annotation | ||
| J3_7QGU_005 | No text annotation | ||
| J3_7QGU_006 | No text annotation | ||
| J3_7QGU_007 | No text annotation | ||
| J3_7QGU_008 | No text annotation | ||
| J3_7QGU_030 | No text annotation | ||
| J3_7QGU_031 | No text annotation | ||
| J3_7QGU_009 | No text annotation | ||
| J3_7QGU_032 | No text annotation | ||
| J3_7QGU_010 | No text annotation | ||
| J3_7QGU_011 | No text annotation | ||
| J3_7QGU_033 | No text annotation | ||
| J3_7QGU_012 | No text annotation | ||
| J3_7QGU_013 | No text annotation | ||
| J3_7QGU_014 | No text annotation | ||
| J3_7QGU_015 | No text annotation | ||
| J3_7QGU_034 | No text annotation | ||
| J3_7QGU_016 | No text annotation | ||
| J3_7QGU_035 | No text annotation | ||
| J3_7QGU_017 | No text annotation | ||
| J3_7QGU_018 | No text annotation | ||
| J3_7QGU_036 | No text annotation | ||
| J3_7QGU_019 | No text annotation | ||
| J3_7QGU_020 | No text annotation | ||
| J3_7QGU_037 | No text annotation | ||
| J3_7QGU_021 | No text annotation | ||
| J3_7QGU_038 | No text annotation | ||
| J3_7QGU_022 | No text annotation | ||
| J3_7QGU_023 | No text annotation | ||
| J3_7QGU_039 | No text annotation | ||
| J3_7QGU_024 | No text annotation | ||
| J3_7QGU_025 | No text annotation | ||
| J3_7QGU_040 | No text annotation | ||
| J3_7QGU_026 | No text annotation | ||
| J4_7QGU_001 | No text annotation | ||
| J4_7QGU_002 | No text annotation | ||
| J4_7QGU_003 | No text annotation | ||
| J4_7QGU_004 | No text annotation | ||
| J4_7QGU_005 | No text annotation | ||
| J4_7QGU_006 | No text annotation | ||
| J4_7QGU_007 | No text annotation | ||
| J4_7QGU_008 | No text annotation | ||
| J4_7QGU_009 | No text annotation | ||
| J4_7QGU_010 | No text annotation | ||
| J4_7QGU_011 | No text annotation | ||
| J4_7QGU_012 | No text annotation | ||
| J4_7QGU_013 | No text annotation | ||
| J4_7QGU_014 | No text annotation | ||
| J4_7QGU_015 | tRNA junction | ||
| J5_7QGU_001 | No text annotation | ||
| J5_7QGU_002 | No text annotation | ||
| J5_7QGU_003 | No text annotation | ||
| J5_7QGU_004 | No text annotation | ||
| J5_7QGU_005 | No text annotation | ||
| J5_7QGU_007 | No text annotation | ||
| J5_7QGU_008 | No text annotation | ||
| J5_7QGU_009 | No text annotation | ||
| J6_7QGU_001 | No text annotation | ||
| J6_7QGU_002 | No text annotation | ||
| J7_7QGU_001 | No text annotation | ||
| J7_7QGU_003 | No text annotation | ||
| J7_7QGU_002 | No text annotation |
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