HL_7QH6_005

3D structure

PDB id

7QH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

UUCUGCAUAA

Length

10 nucleotides

Bulged bases

7QH6|1|A|A|1855

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QH6_005 not in the Motif Atlas

Geometric match to HL_5AMQ_001

Geometric discrepancy: 0.3134

The information below is about HL_5AMQ_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.4

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

7QH6|1|A|U|1847
7QH6|1|A|U|1848
7QH6|1|A|C|1849
7QH6|1|A|U|1850
7QH6|1|A|G|1851
7QH6|1|A|C|1852
7QH6|1|A|A|1853
7QH6|1|A|U|1854
7QH6|1|A|A|1855
7QH6|1|A|A|1856

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 0

39S ribosomal protein L32, mitochondrial

Chain M

39S ribosomal protein L15, mitochondrial

Chain S

39S ribosomal protein L21, mitochondrial