7QH6 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7QH6_001 | 1/A/1722:1729 | No text annotation | geometric HL_4WF9_006 HL_02262.1 | |
| HL_7QH6_002 | 1/A/1746:1752 | No text annotation | geometric HL_4WF9_003 HL_75660.10 | |
| HL_7QH6_003 | 1/A/1786:1791 | GNRA | homologous HL_7A0S_015 HL_34789.6 | |
| HL_7QH6_004 | 1/A/1831:1839 | No text annotation | geometric HL_4V88_198 NA | |
| HL_7QH6_005 | 1/A/1847:1856 | No text annotation | geometric HL_5AMQ_001 HL_89167.4 | |
| HL_7QH6_006 | 1/A/1884:1889 | No text annotation | geometric HL_5TBW_006 NA | |
| HL_7QH6_008 | 1/A/1988:1996 | No text annotation | geometric HL_5TBW_021 NA | |
| HL_7QH6_009 | 1/A/2035:2040 | No text annotation | homologous HL_7RQB_025 NA | |
| HL_7QH6_011 | 1/A/2107:2114 | GNRA | homologous HL_7A0S_026 HL_34789.6 | |
| HL_7QH6_012 | 1/A/2129:2136 | No text annotation | homologous HL_5J7L_160 NA | |
| HL_7QH6_014 | 1/A/2279:2286 | No text annotation | geometric HL_5E6M_002 HL_55735.1 | |
| HL_7QH6_015 | 1/A/2319:2324 | UNCG | geometric HL_4U7U_001 HL_61337.6 | |
| HL_7QH6_017 | 1/A/2392:2398 | No text annotation | ||
| HL_7QH6_019 | 1/A/2428:2435 | No text annotation | homologous HL_4WF9_038 HL_28592.4 | |
| HL_7QH6_021 | 1/A/2518:2532 | No text annotation | ||
| HL_7QH6_022 | 1/A/2690:2699 | No text annotation | homologous HL_4WF9_047 HL_78372.3 | |
| HL_7QH6_025 | 1/A/2828:2840 | No text annotation | ||
| HL_7QH6_026 | 1/A/2862:2870 | No text annotation | geometric HL_2ZZM_002 HL_33487.2 | |
| HL_7QH6_031 | 1/A/3154:3159 | No text annotation | geometric HL_5FMZ_001 HL_21043.1 | |
| HL_7QH6_032 | 1/A/3176:3193 | No text annotation | geometric HL_7A0S_074 NA | |
| HL_7QH6_033 | 1/A/3216:3224 | No text annotation | geometric HL_7RQB_068 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7QH6_007 | No text annotation | ||
| HL_7QH6_010 | Externally structured | ||
| HL_7QH6_013 | No text annotation | ||
| HL_7QH6_016 | Externally structured | ||
| HL_7QH6_018 | Mini UNCG | ||
| HL_7QH6_020 | No text annotation | ||
| HL_7QH6_023 | tRNA D-loop | ||
| HL_7QH6_024 | LSU P loop | ||
| HL_7QH6_027 | GNRA with extra near cWW | ||
| HL_7QH6_028 | No text annotation | ||
| HL_7QH6_029 | GNRA | ||
| HL_7QH6_030 | GNRA | ||
| HL_7QH6_034 | tRNA D-loop | ||
| HL_7QH6_035 | No text annotation | ||
| HL_7QH6_036 | Externally structured |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7QH6_002 | 1/A/1682:1683, 1/A/1768:1770 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_7QH6_003 | 1/A/1739:1745, 1/A/1753:1758 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_4V9F_106 IL_02666.3 | |
| IL_7QH6_004 | 1/A/1845:1847, 1/A/1856:1858 | Isolated non-canonical cWW pair | homologous IL_4WF9_017 IL_01334.1 | |
| IL_7QH6_005 | 1/A/1877:1879, 1/A/1895:1897 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_01003.6 | |
| IL_7QH6_006 | 1/A/1880:1883, 1/A/1890:1894 | No text annotation | ||
| IL_7QH6_007 | 1/A/1904:1906, 1/A/2016:2018 | Isolated non-canonical cWW pair | homologous IL_4WF9_020 IL_01003.6 | |
| IL_7QH6_008 | 1/A/1906:1910, 1/A/2009:2016 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_7QH6_009 | 1/A/1913:1915, 1/A/2004:2006 | Isolated non-canonical cWW pair | geometric IL_5TBW_079 NA | |
| IL_7QH6_010 | 1/A/1925:1927, 1/A/1977:1979 | Isolated non-canonical cWW pair | geometric IL_1MFQ_003 IL_01003.6 | |
| IL_7QH6_011 | 1/A/1985:1987, 1/A/1997:2001 | Multiple bulged bases | homologous IL_7RQB_023 NA | |
| IL_7QH6_012 | 1/A/2046:2048, 1/A/2091:2094 | No text annotation | geometric IL_4V9F_053 IL_49140.2 | |
| IL_7QH6_013 | 1/A/2057:2063, 1/A/2076:2082 | No text annotation | geometric IL_5XWG_002 IL_74768.1 | |
| IL_7QH6_014 | 1/A/2125:2127, 1/A/2138:2140 | No text annotation | ||
| IL_7QH6_015 | 1/A/2145:2147, 1/A/2254:2255 | Single bulged C | homologous IL_5J7L_276 NA | |
| IL_7QH6_016 | 1/A/2149:2153, 1/A/2248:2252 | UAA/GAN | geometric IL_7A0S_033 IL_08938.3 | |
| IL_7QH6_017 | 1/A/2306:2313, 1/A/2674:2680 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_7QH6_018 | 1/A/2330:2333, 1/A/2441:2447 | No text annotation | ||
| IL_7QH6_035 | 1/A/2377:2381, 1/A/2411:2419 | No text annotation | ||
| IL_7QH6_019 | 1/A/2456:2461, 1/A/2666:2668 | No text annotation | ||
| IL_7QH6_020 | 1/A/2467:2469, 1/A/2658:2660 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.3 | |
| IL_7QH6_021 | 1/A/2470:2473, 1/A/2656:2657 | Major groove platform; stack outside cWW | homologous IL_4WF9_064 IL_74641.4 | |
| IL_7QH6_022 | 1/A/2712:2715, 1/A/3104:3106 | No text annotation | geometric IL_6DME_003 IL_75527.4 | |
| IL_7QH6_023 | 1/A/2730:2732, 1/A/2929:2930 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_7QH6_024 | 1/A/2733:2734, 1/A/2925:2928 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_7QH6_027 | 1/A/2856:2860, 1/A/2872:2876 | Double sheared with non-canonical cWW | geometric IL_5J7L_274 NA | |
| IL_7QH6_036 | 1/A/3147:3152, 1/A/3161:3164 | No text annotation | geometric IL_5TBW_062 NA | |
| IL_7QH6_033 | 1/A/3148:3152, 1/A/3161:3163 | C-loop | geometric IL_7RQB_104 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7QH6_001 | No text annotation | ||
| IL_7QH6_025 | Minor groove platform | ||
| IL_7QH6_026 | No text annotation | ||
| IL_7QH6_028 | Major groove platform with extra pair | ||
| IL_7QH6_029 | Major groove minor groove platform with extra cWW | ||
| IL_7QH6_030 | Single bulged A | ||
| IL_7QH6_031 | No text annotation | ||
| IL_7QH6_032 | No text annotation | ||
| IL_7QH6_034 | Isolated cWH basepair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7QH6_001 | 1/A/1678:1681, 1/A/1771:1785, 1/A/1792:1797 | No text annotation | ||
| J3_7QH6_002 | 1/A/1915:1921, 1/A/1983:1985, 1/A/2001:2004 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_7QH6_003 | 1/A/2336:2343, 1/A/2423:2427, 1/A/2436:2438 | No text annotation | ||
| J3_7QH6_004 | 1/A/2343:2345, 1/A/2368:2375, 1/A/2421:2423 | No text annotation | ||
| J3_7QH6_006 | 1/A/2846:2848, 1/A/2890:2900, 1/A/2909:2915 | No text annotation | ||
| J4_7QH6_001 | 1/A/2314:2317, 1/A/2326:2327, 1/A/2450:2453, 1/A/2671:2673 | No text annotation | ||
| J4_7QH6_002 | 1/A/2336:2345, 1/A/2368:2375, 1/A/2421:2427, 1/A/2436:2438 | No text annotation | ||
| J5_7QH6_001 | 1/A/1827:1829, 1/A/1841:1845, 1/A/1858:1860, 1/A/2305:2306, 1/A/2680:2681 | No text annotation | homologous J5_7A0S_003 J5_43153.6 | |
| J5_7QH6_002 | 1/A/1865:1875, 1/A/1899:1903, 1/A/2019:2022, 1/A/2271:2275, 1/A/2290:2300 | No text annotation | ||
| J5_7QH6_003 | 1/A/2737:2740, 1/A/2807:2810, 1/A/2822:2823, 1/A/2845:2846, 1/A/2915:2922 | No text annotation | homologous J5_7A0S_007 J5_39529.2 | |
| J6_7QH6_001 | 1/A/2027:2032, 1/A/2043:2045, 1/A/2095:2098, 1/A/2123:2125, 1/A/2140:2143, 1/A/2257:2266 | No text annotation | ||
| J6_7QH6_002 | 1/A/2737:2740, 1/A/2807:2810, 1/A/2822:2823, 1/A/2845:2848, 1/A/2890:2900, 1/A/2909:2922 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7QH6_005 | No text annotation |
Coloring options: