HL_7QH6_023

3D structure

PDB id

7QH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

AAACACCU

Length

8 nucleotides

Bulged bases

7QH6|1|A|C|2756

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QH6_023 not in the Motif Atlas

Geometric match to HL_1QF6_001

Geometric discrepancy: 0.355

The information below is about HL_1QF6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

7QH6|1|A|A|2753
7QH6|1|A|A|2754
7QH6|1|A|A|2755
7QH6|1|A|C|2756
7QH6|1|A|A|2792
7QH6|1|A|C|2793
7QH6|1|A|C|2794
7QH6|1|A|U|2795

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

39S ribosomal protein L9, mitochondrial

Chain X

39S ribosomal protein L28, mitochondrial