HL_7QH7_028

3D structure

PDB id

7QH7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human mtLSU assembly intermediate upon MRM2 depletion - class 4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

AGUCCAUAU

Length

9 nucleotides

Bulged bases

7QH7|1|A|U|2960, 7QH7|1|A|A|2965

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QH7_028 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.1794

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7QH7|1|A|A|2958
7QH7|1|A|G|2959
7QH7|1|A|U|2960
7QH7|1|A|C|2961
7QH7|1|A|C|2962
7QH7|1|A|A|2963
7QH7|1|A|U|2964
7QH7|1|A|A|2965
7QH7|1|A|U|2966

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 4

39S ribosomal protein L36, mitochondrial

Chain N

39S ribosomal protein L16, mitochondrial