RNA 3D Hub //

7QH7 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7QH7_0011/A/1722:1729No text annotation
geometric
HL_4WF9_006
HL_48677.2
HL_7QH7_0021/A/1746:1752No text annotation
geometric
HL_7A0S_008
HL_76371.3
HL_7QH7_0031/A/1786:1791GNRA
geometric
HL_5J7L_196
NA
HL_7QH7_0041/A/1831:1839No text annotation
geometric
HL_8C3A_039
NA
HL_7QH7_0051/A/1848:1855No text annotation
HL_7QH7_0061/A/1884:1889No text annotation
geometric
HL_5TBW_006
NA
HL_7QH7_0071/A/1934:1940No text annotation
geometric
HL_5FMZ_001
HL_91813.1
HL_7QH7_0081/A/1954:1963No text annotation
geometric
HL_7RQB_023
NA
HL_7QH7_0091/A/1988:1996No text annotation
geometric
HL_5TBW_021
NA
HL_7QH7_0101/A/2035:2040No text annotation
geometric
HL_7RQB_025
NA
HL_7QH7_0111/A/2064:2075No text annotation
HL_7QH7_0131/A/2129:2136No text annotation
geometric
HL_5NFV_001
HL_69752.4
HL_7QH7_0141/A/2153:2248No text annotation
HL_7QH7_0151/A/2279:2286No text annotation
HL_7QH7_0161/A/2319:2324No text annotation
geometric
HL_5U3G_001
HL_75660.9
HL_7QH7_0171/A/2349:2364No text annotation
geometric
HL_3SKI_003
HL_97696.1
HL_7QH7_0181/A/2400:2403Mini UNCG
geometric
HL_5F9R_002
NA
HL_7QH7_0191/A/2428:2435No text annotation
geometric
HL_1WZ2_007
HL_75660.9
HL_7QH7_0201/A/2497:2507No text annotation
geometric
HL_5J7L_178
NA
HL_7QH7_0211/A/2518:2532No text annotation
HL_7QH7_0221/A/2612:2620No text annotation
geometric
HL_5TBW_050
NA
HL_7QH7_0231/A/2690:2699No text annotation
homologous
HL_8VTW_049
NA
HL_7QH7_0241/A/2753:2795No text annotation
HL_7QH7_0261/A/2828:2840No text annotation
HL_7QH7_0271/A/2862:2870No text annotation
geometric
HL_2ZZM_002
HL_33487.2
HL_7QH7_0281/A/2958:2966No text annotation
geometric
HL_2ZNI_001
HL_75660.9
HL_7QH7_0301/A/3038:3044No text annotation
geometric
HL_5M3H_001
NA
HL_7QH7_0311/A/3081:3086GNRA
geometric
HL_7A0S_068
HL_34789.5
HL_7QH7_0331/A/3154:3159No text annotation
geometric
HL_5FMZ_001
HL_91813.1
HL_7QH7_0341/A/3176:3193No text annotation
homologous
HL_7A0S_074
NA
HL_7QH7_0351/A/3216:3224No text annotation
geometric
HL_7RQB_068
NA

Problematic loops

#loop idProblemSequence
HL_7QH7_012tRNA D-loop
HL_7QH7_025No text annotation
HL_7QH7_038No text annotation
HL_7QH7_029Mini UNCG
HL_7QH7_032GNRA related
HL_7QH7_036No text annotation
HL_7QH7_037No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7QH7_0011/A/1672:1678,
1/A/1797:1816		No text annotation
IL_7QH7_0021/A/1682:1683,
1/A/1768:1770		Single bulged C
geometric
IL_7KGA_004
IL_05642.4
IL_7QH7_0401/A/1684:1739,
1/A/1758:1767		No text annotation
IL_7QH7_0031/A/1739:1745,
1/A/1753:1758		7x6 Sarcin-Ricin; G-bulge
geometric
IL_4V9F_106
IL_02666.2
IL_7QH7_0041/A/1845:1847,
1/A/1856:1858		Isolated non-canonical cWW pair
geometric
IL_4Y1M_005
IL_71625.4
IL_7QH7_0051/A/1877:1879,
1/A/1895:1897		Isolated non-canonical cWW pair
geometric
IL_4E59_001
IL_01003.5
IL_7QH7_0061/A/1880:1883,
1/A/1890:1894		No text annotation
IL_7QH7_0071/A/1904:1906,
1/A/2016:2018		Isolated non-canonical cWW pair
geometric
IL_5TBW_027
NA
IL_7QH7_0081/A/1906:1910,
1/A/2009:2016		tHW-tHW cross-strand stack
geometric
IL_7RQB_018
NA
IL_7QH7_0091/A/1913:1915,
1/A/2004:2006		Isolated non-canonical cWW pair
geometric
IL_5TBW_079
NA
IL_7QH7_0101/A/1925:1927,
1/A/1977:1979		Isolated cWH basepair
geometric
IL_2H1M_003
IL_10892.3
IL_7QH7_0111/A/1929:1930,
1/A/1973:1975		Single bulged A
geometric
IL_5J7L_261
NA
IL_7QH7_0121/A/1948:1951,
1/A/1966:1968		Major groove platform with extra cWW
geometric
IL_5TBW_031
NA
IL_7QH7_0131/A/1985:1987,
1/A/1997:2001		Multiple bulged bases
geometric
IL_7RQB_023
NA
IL_7QH7_0141/A/2046:2048,
1/A/2091:2094		No text annotation
geometric
IL_4N0T_004
IL_32983.2
IL_7QH7_0151/A/2057:2063,
1/A/2076:2082		No text annotation
geometric
IL_5XWG_002
IL_74768.1
IL_7QH7_0161/A/2145:2147,
1/A/2254:2255		Single bulged A
geometric
IL_1NBS_005
IL_14190.3
IL_7QH7_0171/A/2149:2153,
1/A/2248:2252		UAA/GAN
geometric
IL_7RQB_036
NA
IL_7QH7_0181/A/2306:2313,
1/A/2674:2680		8x7 Sarcin-Ricin; G-bulge
geometric
IL_5J7L_289
NA
IL_7QH7_0191/A/2330:2333,
1/A/2441:2447		No text annotation
IL_7QH7_0411/A/2377:2381,
1/A/2411:2419		No text annotation
IL_7QH7_0421/A/2384:2400,
1/A/2403:2408		No text annotation
IL_7QH7_0201/A/2456:2461,
1/A/2666:2668		No text annotation
IL_7QH7_0211/A/2467:2469,
1/A/2658:2660		Isolated tWW turn
geometric
IL_4WF9_063
IL_10432.2
IL_7QH7_0221/A/2470:2473,
1/A/2656:2657		Major groove platform; stack outside cWW
geometric
IL_7RQB_066
NA
IL_7QH7_0431/A/2470:2478,
1/A/2653:2657		No text annotation
geometric
IL_4WF9_117
IL_80252.2
IL_7QH7_0441/A/2470:2487,
1/A/2648:2657		No text annotation
IL_7QH7_0231/A/2473:2478,
1/A/2653:2656		Intercalated tWH
geometric
IL_4WF9_065
IL_28217.2
IL_7QH7_0241/A/2478:2487,
1/A/2648:2653		No text annotation
IL_7QH7_0251/A/2490:2491,
1/A/2643:2645		Single bulged A
geometric
IL_4V9F_064
IL_14190.3
IL_7QH7_0451/A/2542:2611,
1/A/2621:2637		No text annotation
IL_7QH7_0261/A/2712:2715,
1/A/3104:3106		Major groove platform with extra pair
geometric
IL_5TBW_091
NA
IL_7QH7_0271/A/2717:2719,
1/A/3099:3102		No text annotation
geometric
IL_5J7L_321
NA
IL_7QH7_0281/A/2730:2732,
1/A/2929:2930		Single bulged U
geometric
IL_7RQB_080
NA
IL_7QH7_0291/A/2733:2734,
1/A/2925:2928		Minor groove platform
geometric
IL_7RQB_081
NA
IL_7QH7_0301/A/2744:2747,
1/A/2801:2803		No text annotation
IL_7QH7_0461/A/2846:2855,
1/A/2877:2915		No text annotation
IL_7QH7_0311/A/2856:2860,
1/A/2872:2876		Double sheared with non-canonical cWW
geometric
IL_5J7L_274
NA
IL_7QH7_0331/A/2997:2999,
1/A/3061:3065		Isolated non-canonical cWW with bulges
geometric
IL_7A0S_089
IL_68118.5
IL_7QH7_0341/A/2999:3000,
1/A/3058:3061		No text annotation
homologous
IL_8VTW_097
NA
IL_7QH7_0351/A/3008:3010,
1/A/3027:3031		No text annotation
IL_7QH7_0361/A/3078:3079,
1/A/3088:3090		Single bulged A
geometric
IL_4V88_399
NA
IL_7QH7_0371/A/3115:3117,
1/A/3139:3141		Isolated non-canonical cWW pair
geometric
IL_4LFB_061
NA
IL_7QH7_0391/A/3148:3152,
1/A/3161:3163		Major groove minor groove platform with tHH
geometric
IL_4WF9_050
IL_06671.2

Problematic loops

#loop idProblemSequence
IL_7QH7_032No text annotation
IL_7QH7_047Other IL
IL_7QH7_0388x7 Sarcin-Ricin; G-bulge

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7QH7_0011/A/1678:1681,
1/A/1771:1785,
1/A/1792:1797		No text annotation
J3_7QH7_0021/A/1915:1921,
1/A/1983:1985,
1/A/2001:2004		No text annotation
homologous
J3_7A0S_004
J3_46658.2
J3_7QH7_0031/A/1930:1932,
1/A/1942:1946,
1/A/1970:1973		No text annotation
homologous
J3_8VTW_002
NA
J3_7QH7_0041/A/2336:2343,
1/A/2423:2427,
1/A/2436:2438		No text annotation
J3_7QH7_0051/A/2343:2345,
1/A/2368:2375,
1/A/2421:2423		No text annotation
J3_7QH7_0061/A/3004:3007,
1/A/3032:3034,
1/A/3048:3054		No text annotation
homologous
J3_8VTW_008
NA
J4_7QH7_0011/A/2314:2317,
1/A/2326:2327,
1/A/2450:2453,
1/A/2671:2673		No text annotation
J4_7QH7_0021/A/2336:2345,
1/A/2368:2375,
1/A/2421:2427,
1/A/2436:2438		No text annotation
J4_7QH7_0031/A/2492:2496,
1/A/2508:2513,
1/A/2537:2542,
1/A/2637:2642		No text annotation
J5_7QH7_0011/A/1827:1829,
1/A/1841:1845,
1/A/1858:1860,
1/A/2305:2306,
1/A/2680:2681		No text annotation
homologous
J5_9DFE_003
J5_43153.6
J5_7QH7_0021/A/1865:1875,
1/A/1899:1903,
1/A/2019:2022,
1/A/2271:2275,
1/A/2290:2300		No text annotation
J5_7QH7_0031/A/2720:2726,
1/A/2934:2947,
1/A/2977:2994,
1/A/3068:3075,
1/A/3093:3098		No text annotation
J5_7QH7_0041/A/2737:2740,
1/A/2807:2810,
1/A/2822:2823,
1/A/2845:2846,
1/A/2915:2922		No text annotation
homologous
J5_7A0S_007
J5_39529.2
J5_7QH7_0051/A/2737:2740,
1/A/2807:2810,
1/A/2822:2823,
1/A/2845:2855,
1/A/2877:2922		No text annotation
J6_7QH7_0011/A/2027:2032,
1/A/2043:2045,
1/A/2095:2098,
1/A/2123:2127,
1/A/2138:2143,
1/A/2257:2266		No text annotation

Problematic loops

No problematic loops


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