HL_7QIW_005

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CUGGAAGG

Length

8 nucleotides

Bulged bases

7QIW|1|2|G|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIW_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.0879

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7QIW|1|2|C|191
7QIW|1|2|U|192
7QIW|1|2|G|193
7QIW|1|2|G|194
7QIW|1|2|A|195
7QIW|1|2|A|196
7QIW|1|2|G|197
7QIW|1|2|G|198

Current chains

Chain 2

25S rRNA

Nearby chains

Chain a

KOW domain-containing protein

Chain g

60S ribosomal protein eL32