7QIW Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7QIW_001 | 1/2/36:43 | No text annotation | homologous HL_8C3A_001 NA | |
| HL_7QIW_002 | 1/2/67:72 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7QIW_003 | 1/2/88:94 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_7QIW_004 | 1/2/130:134 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_7QIW_005 | 1/2/191:198 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_7QIW_006 | 1/2/205:209 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_7QIW_007 | 1/2/213:221 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_7QIW_008 | 1/2/275:284 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_7QIW_009 | 1/2/300:309 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_7QIW_010 | 1/2/354:359 | GNRA | homologous HL_8C3A_010 NA | |
| HL_7QIW_011 | 1/2/379:384 | GNRA | geometric HL_5B2T_001 HL_34789.4 | |
| HL_7QIW_013 | 1/2/534:544 | No text annotation | ||
| HL_7QIW_014 | 1/2/588:592 | Mini UNCG | geometric HL_4V9F_021 HL_90436.3 | |
| HL_7QIW_015 | 1/2/598:603 | UNCG | geometric HL_5J7L_175 NA | |
| HL_7QIW_072 | 1/2/651:660 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_7QIW_017 | 1/2/697:706 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_7QIW_018 | 1/2/720:725 | GNRA | homologous HL_8C3A_016 NA | |
| HL_7QIW_019 | 1/2/742:747 | No text annotation | geometric HL_5U3G_001 HL_75660.8 | |
| HL_7QIW_020 | 1/2/773:778 | No text annotation | homologous HL_8C3A_018 NA | |
| HL_7QIW_021 | 1/2/854:859 | GNRA | homologous HL_8C3A_019 NA | |
| HL_7QIW_073 | 1/2/886:895 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_7QIW_023 | 1/2/920:928 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_7QIW_024 | 1/2/968:973 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_7QIW_025 | 1/2/1088:1095 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_7QIW_026 | 1/2/1137:1143 | GNRA | geometric HL_5TBW_025 NA | |
| HL_7QIW_027 | 1/2/1159:1166 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_7QIW_028 | 1/2/1359:1369 | Mini UNCG | geometric HL_4OOG_001 HL_12626.2 | |
| HL_7QIW_029 | 1/2/1414:1419 | GNRA | homologous HL_8C3A_030 NA | |
| HL_7QIW_030 | 1/2/1473:1481 | T-loop with 2 stacked bulged bases | geometric HL_5TBW_031 NA | |
| HL_7QIW_031 | 1/2/1517:1523 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_7QIW_032 | 1/2/1555:1560 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_7QIW_034 | 1/2/1604:1613 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_7QIW_035 | 1/2/1638:1643 | GNRA | homologous HL_8C3A_036 NA | |
| HL_7QIW_036 | 1/2/1684:1692 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_7QIW_037 | 1/2/1724:1730 | No text annotation | geometric HL_5HR7_005 HL_50006.5 | |
| HL_7QIW_039 | 1/2/1798:1802 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_7QIW_076 | 1/2/1850:1857 | No text annotation | geometric HL_8C3A_041 NA | |
| HL_7QIW_040 | 1/2/1868:1874 | GNRA | homologous HL_8C3A_042 NA | |
| HL_7QIW_041 | 1/2/1929:1934 | UNCG | homologous HL_8C3A_043 NA | |
| HL_7QIW_043 | 1/2/2114:2118 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_7QIW_077 | 1/2/2139:2149 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_7QIW_045 | 1/2/2168:2173 | GNRA | homologous HL_8C3A_047 NA | |
| HL_7QIW_078 | 1/2/2223:2228 | GNRA | homologous HL_8P9A_159 HL_34789.4 | |
| HL_7QIW_047 | 1/2/2256:2266 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_7QIW_048 | 1/2/2295:2303 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_7QIW_049 | 1/2/2372:2381 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_7QIW_050 | 1/2/2571:2577 | No text annotation | geometric HL_5J7L_018 NA | |
| HL_7QIW_051 | 1/2/2620:2628 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_7QIW_052 | 1/2/2637:2649 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_7QIW_053 | 1/2/2677:2685 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_7QIW_054 | 1/2/2697:2704 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_7QIW_055 | 1/2/2728:2736 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_7QIW_079 | 1/2/2748:2753 | GNRA | homologous HL_8C3A_060 NA | |
| HL_7QIW_057 | 1/2/2780:2788 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_7QIW_058 | 1/2/2844:2852 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_7QIW_059 | 1/2/2901:2908 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_7QIW_060 | 1/2/2924:2930 | No text annotation | homologous HL_8C3A_064 NA | |
| HL_7QIW_061 | 1/2/2967:2972 | GNRA | homologous HL_8C3A_065 NA | |
| HL_7QIW_062 | 1/2/3028:3033 | GNRA | geometric HL_5J7L_197 NA | |
| HL_7QIW_063 | 1/2/3071:3076 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_7QIW_064 | 1/2/3113:3127 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_7QIW_065 | 1/2/3234:3241 | No text annotation | homologous HL_8C3A_070 NA | |
| HL_7QIW_066 | 1/2/3296:3304 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_7QIW_080 | 1/5/32:45 | No text annotation | homologous HL_4V9F_074 HL_97756.3 | |
| HL_7QIW_068 | 1/5/36:41 | No text annotation | homologous HL_5J7L_203 NA | |
| HL_7QIW_069 | 1/5/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_7QIW_081 | 1/8/52:61 | No text annotation | homologous HL_8P4V_072 NA | |
| HL_7QIW_070 | 1/8/74:94 | No text annotation | homologous HL_8C3A_230 NA | |
| HL_7QIW_071 | 1/8/113:119 | No text annotation | geometric HL_5TBW_075 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7QIW_012 | No text annotation | ||
| HL_7QIW_016 | No text annotation | ||
| HL_7QIW_022 | No text annotation | ||
| HL_7QIW_074 | No text annotation | ||
| HL_7QIW_033 | No text annotation | ||
| HL_7QIW_075 | tRNA D-loop | ||
| HL_7QIW_038 | No text annotation | ||
| HL_7QIW_042 | No text annotation | ||
| HL_7QIW_044 | No text annotation | ||
| HL_7QIW_046 | GNRA with extra near cWW | ||
| HL_7QIW_056 | GNRA with extra cWW | ||
| HL_7QIW_067 | Mini UNCG |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7QIW_001 | 1/2/1:3, 1/8/161:163 | Isolated non-canonical cWW pair | geometric IL_4WF9_083 IL_01003.4 | |
| IL_7QIW_002 | 1/2/5:6, 1/8/157:159 | No text annotation | ||
| IL_7QIW_003 | 1/2/11:13, 1/8/151:152 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_7QIW_004 | 1/2/25:26, 1/2/54:56 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7QIW_005 | 1/2/29:36, 1/2/43:51 | No text annotation | homologous IL_8C3A_005 NA | |
| IL_7QIW_006 | 1/2/80:88, 1/2/94:101 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.1 | |
| IL_7QIW_007 | 1/2/121:122, 1/2/142:147 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_7QIW_008 | 1/2/157:158, 1/2/257:259 | Minor groove platform | geometric IL_6DLR_003 IL_34520.3 | |
| IL_7QIW_009 | 1/2/162:164, 1/2/252:253 | Major groove platform | geometric IL_1G1X_005 NA | |
| IL_7QIW_010 | 1/2/166:168, 1/2/244:250 | No text annotation | ||
| IL_7QIW_011 | 1/2/174:176, 1/2/234:238 | No text annotation | geometric IL_7ENI_001 IL_70784.1 | |
| IL_7QIW_012 | 1/2/181:183, 1/2/227:229 | Isolated non-canonical cWW pair | geometric IL_5TBW_021 NA | |
| IL_7QIW_013 | 1/2/186:188, 1/2/201:202 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7QIW_014 | 1/2/334:336, 1/8/30:31 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_7QIW_015 | 1/2/373:376, 1/2/387:400 | No text annotation | homologous IL_8C3A_015 NA | |
| IL_7QIW_017 | 1/2/401:407, 1/8/18:24 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_7QIW_169 | 1/2/430:431, 1/2/635:637 | Single bulged U | geometric IL_6JQ6_006 IL_97561.5 | |
| IL_7QIW_019 | 1/2/433:436, 1/2/632:633 | Stack outside cWW | geometric IL_4KZD_006 IL_77710.1 | |
| IL_7QIW_020 | 1/2/447:448, 1/2/487:489 | Single bulged U | geometric IL_7KVT_002 IL_97561.5 | |
| IL_7QIW_022 | 1/2/459:461, 1/2/473:475 | Isolated non-canonical cWW pair | geometric IL_5TBW_127 NA | |
| IL_7QIW_023 | 1/2/498:500, 1/2/626:628 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_01003.4 | |
| IL_7QIW_024 | 1/2/522:528, 1/2/551:555 | Partly complementary | geometric IL_8D29_010 IL_71154.3 | |
| IL_7QIW_025 | 1/2/529:530, 1/2/548:550 | Single bulged U | geometric IL_3D2V_001 IL_97561.5 | |
| IL_7QIW_026 | 1/2/595:597, 1/2/604:607 | Isolated non-canonical cWW pair | geometric IL_3TD0_001 NA | |
| IL_7QIW_170 | 1/2/679:681, 1/2/802:804 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_7QIW_028 | 1/2/691:695, 1/2/708:713 | No text annotation | ||
| IL_7QIW_029 | 1/2/735:739, 1/2/750:755 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
| IL_7QIW_030 | 1/2/762:763, 1/2/789:791 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_7QIW_031 | 1/2/765:766, 1/2/785:787 | Single bulged U | homologous IL_8C3A_027 NA | |
| IL_7QIW_032 | 1/2/767:772, 1/2/779:784 | No text annotation | ||
| IL_7QIW_171 | 1/2/813:815, 1/2/948:950 | Isolated non-canonical cWW pair | homologous IL_8P9A_255 IL_01003.4 | |
| IL_7QIW_172 | 1/2/815:819, 1/2/941:948 | No text annotation | homologous IL_8P9A_256 IL_73855.1 | |
| IL_7QIW_034 | 1/2/838:839, 1/2/905:907 | Single bulged A | geometric IL_4WF9_022 IL_14190.2 | |
| IL_7QIW_035 | 1/2/843:844, 1/2/869:871 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_7QIW_036 | 1/2/844:848, 1/2/865:869 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_7QIW_037 | 1/2/879:882, 1/2/898:900 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_7QIW_038 | 1/2/883:885, 1/2/896:897 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_7QIW_039 | 1/2/917:919, 1/2/929:933 | Multiple bulged bases | geometric IL_5TBW_033 NA | |
| IL_7QIW_040 | 1/2/964:966, 1/2/975:977 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_7QIW_041 | 1/2/979:980, 1/2/1122:1124 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_7QIW_042 | 1/2/987:994, 1/2/1112:1115 | No text annotation | ||
| IL_7QIW_043 | 1/2/995:997, 1/2/1110:1111 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_7QIW_173 | 1/2/1003:1009, 1/2/1064:1070 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_8P9A_266 IL_94128.1 | |
| IL_7QIW_174 | 1/2/1009:1010, 1/2/1062:1064 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_7QIW_175 | 1/2/1011:1016, 1/2/1058:1061 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_7QIW_195 | 1/2/1018:1021, 1/2/1053:1056 | Tandem non-canonical cWW pairs | homologous IL_8P9A_269 IL_71194.2 | |
| IL_7QIW_048 | 1/2/1021:1023, 1/2/1051:1053 | Isolated non-canonical cWW pair | homologous IL_8C3A_045 NA | |
| IL_7QIW_196 | 1/2/1025:1028, 1/2/1048:1049 | Major groove minor groove platform; mini C-loop | geometric IL_8C3A_430 NA | |
| IL_7QIW_051 | 1/2/1086:1088, 1/2/1095:1096 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_7QIW_176 | 1/2/1131:1133, 1/2/1147:1149 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 IL_01003.4 | |
| IL_7QIW_053 | 1/2/1178:1182, 1/2/1340:1344 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_7QIW_054 | 1/2/1184:1191, 1/2/1337:1338 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_7QIW_055 | 1/2/1191:1193, 1/2/1336:1337 | Single bulged U | homologous IL_8C3A_053 NA | |
| IL_7QIW_056 | 1/2/1198:1206, 1/2/1326:1331 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_7QIW_057 | 1/2/1206:1217, 1/2/1311:1326 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_7QIW_058 | 1/2/1219:1221, 1/2/1308:1309 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_7QIW_059 | 1/2/1226:1228, 1/2/1301:1303 | No text annotation | geometric IL_2ZNI_001 NA | |
| IL_7QIW_178 | 1/2/1230:1238, 1/2/1295:1299 | Kink-turn | homologous IL_8P9A_282 IL_99692.3 | |
| IL_7QIW_061 | 1/2/1388:1390, 1/2/1439:1442 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_7QIW_062 | 1/2/1399:1407, 1/2/1425:1430 | No text annotation | ||
| IL_7QIW_063 | 1/2/1409:1411, 1/2/1422:1423 | Single bulged U | geometric IL_5TBW_134 NA | |
| IL_7QIW_179 | 1/2/1455:1461, 1/2/2357:2362 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8P9A_289 IL_02666.1 | |
| IL_7QIW_067 | 1/2/1499:1502, 1/2/1843:1860 | No text annotation | ||
| IL_7QIW_068 | 1/2/1512:1516, 1/2/1524:1526 | Minor groove platform | geometric IL_4LFB_037 IL_61370.1 | |
| IL_7QIW_069 | 1/2/1543:1547, 1/2/1590:1595 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_7QIW_070 | 1/2/1548:1549, 1/2/1587:1589 | Single bulged U | geometric IL_6UFG_004 IL_97561.5 | |
| IL_7QIW_071 | 1/2/1551:1552, 1/2/1565:1567 | No text annotation | ||
| IL_7QIW_072 | 1/2/1552:1553, 1/2/1562:1565 | Major groove platform | geometric IL_4WF9_094 IL_46637.2 | |
| IL_7QIW_073 | 1/2/1623:1625, 1/2/1831:1832 | Single stack bend | geometric IL_4WF9_007 IL_15011.3 | |
| IL_7QIW_074 | 1/2/1628:1629, 1/2/1826:1828 | Single bulged C | geometric IL_3HHN_003 IL_05642.3 | |
| IL_7QIW_075 | 1/2/1632:1635, 1/2/1817:1823 | No text annotation | ||
| IL_7QIW_076 | 1/2/1649:1653, 1/2/1812:1816 | Triple sheared | geometric IL_7RQB_075 NA | |
| IL_7QIW_077 | 1/2/1665:1667, 1/2/1792:1794 | Isolated cWH basepair | geometric IL_5F5F_003 IL_10892.2 | |
| IL_7QIW_078 | 1/2/1673:1674, 1/2/1784:1786 | Single bulged C | homologous IL_8C3A_075 NA | |
| IL_7QIW_079 | 1/2/1674:1675, 1/2/1782:1784 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_7QIW_080 | 1/2/1679:1681, 1/2/1695:1697 | Isolated non-canonical cWW pair | geometric IL_5TBW_127 NA | |
| IL_7QIW_081 | 1/2/1698:1702, 1/2/1752:1757 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_7QIW_082 | 1/2/1706:1707, 1/2/1746:1748 | Single bulged C | geometric IL_1DQH_001 NA | |
| IL_7QIW_083 | 1/2/1707:1712, 1/2/1742:1746 | No text annotation | ||
| IL_7QIW_084 | 1/2/1716:1722, 1/2/1732:1738 | No text annotation | homologous IL_8C3A_079 NA | |
| IL_7QIW_181 | 1/2/1889:1895, 1/2/2349:2352 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_7QIW_086 | 1/2/1901:1903, 1/2/2341:2343 | Isolated tWW turn | geometric IL_4WF9_063 IL_10432.1 | |
| IL_7QIW_182 | 1/2/1904:1907, 1/2/2339:2340 | Major groove platform; stack outside cWW | geometric IL_8C3A_082 NA | |
| IL_7QIW_183 | 1/2/1904:1912, 1/2/2336:2340 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_7QIW_088 | 1/2/1907:1912, 1/2/2336:2339 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_7QIW_089 | 1/2/1924:1929, 1/2/1934:1940 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_20700.1 | |
| IL_7QIW_090 | 1/2/1946:1948, 1/2/2110:2112 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_7QIW_091 | 1/2/1953:1954, 1/2/2102:2105 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_7QIW_094 | 1/2/2132:2133, 1/2/2326:2328 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_7QIW_095 | 1/2/2160:2165, 1/2/2176:2183 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_7QIW_097 | 1/2/2199:2202, 1/2/2248:2249 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_7QIW_098 | 1/2/2203:2204, 1/2/2244:2247 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_7QIW_099 | 1/2/2207:2209, 1/2/2240:2241 | Single stack bend | geometric IL_7A0S_054 IL_15011.3 | |
| IL_7QIW_184 | 1/2/2214:2220, 1/2/2231:2237 | No text annotation | homologous IL_8P9A_316 IL_65359.1 | |
| IL_7QIW_104 | 1/2/2279:2280, 1/2/2310:2313 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_7QIW_185 | 1/2/2280:2291, 1/2/2307:2310 | No text annotation | homologous IL_8P9A_318 IL_84014.1 | |
| IL_7QIW_186 | 1/2/2394:2397, 1/2/2990:2992 | No text annotation | homologous IL_8P9A_319 IL_75527.2 | |
| IL_7QIW_108 | 1/2/2399:2401, 1/2/2985:2988 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_7QIW_187 | 1/2/2412:2414, 1/2/2815:2816 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_7QIW_110 | 1/2/2415:2416, 1/2/2811:2814 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_7QIW_112 | 1/2/2426:2428, 1/2/2608:2611 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_7QIW_113 | 1/2/2430:2432, 1/2/2604:2606 | Isolated non-canonical cWW pair | geometric IL_5AY2_003 IL_01003.4 | |
| IL_7QIW_115 | 1/2/2525:2531, 1/2/2588:2591 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_7QIW_117 | 1/2/2618:2619, 1/2/2629:2631 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_7QIW_118 | 1/2/2670:2672, 1/2/2690:2694 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_7QIW_120 | 1/2/2718:2720, 1/2/2744:2745 | Single bulged A | geometric IL_5TBW_013 NA | |
| IL_7QIW_189 | 1/2/2722:2725, 1/2/2739:2742 | Tandem non-canonical cWW pairs | homologous IL_8P9A_327 IL_15225.2 | |
| IL_7QIW_124 | 1/2/2774:2777, 1/2/2791:2792 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_7QIW_190 | 1/2/2827:2828, 1/2/2869:2871 | Major groove platform | homologous IL_8P9A_329 IL_48076.8 | |
| IL_7QIW_191 | 1/2/2828:2830, 1/2/2867:2869 | Isolated non-canonical cWW pair | homologous IL_8P9A_330 IL_01003.4 | |
| IL_7QIW_192 | 1/2/2830:2832, 1/2/2866:2867 | No text annotation | homologous IL_8P9A_331 IL_46637.2 | |
| IL_7QIW_126 | 1/2/2832:2834, 1/2/2862:2866 | Major groove minor groove platform with extra cWW | geometric IL_5TBW_105 NA | |
| IL_7QIW_128 | 1/2/2839:2843, 1/2/2853:2857 | Double sheared with non-canonical cWW | geometric IL_7A0S_087 IL_87767.2 | |
| IL_7QIW_129 | 1/2/2880:2881, 1/2/2953:2955 | Major groove platform | geometric IL_5TBW_107 NA | |
| IL_7QIW_193 | 1/2/2883:2885, 1/2/2947:2951 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_7QIW_131 | 1/2/2885:2886, 1/2/2944:2947 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_7QIW_133 | 1/2/2895:2897, 1/2/2912:2916 | No text annotation | geometric IL_3DD2_004 IL_09353.1 | |
| IL_7QIW_136 | 1/2/2922:2924, 1/2/2930:2932 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_7QIW_138 | 1/2/2964:2965, 1/2/2974:2976 | Single bulged A | homologous IL_8C3A_122 NA | |
| IL_7QIW_139 | 1/2/3007:3010, 1/2/3142:3146 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_7QIW_140 | 1/2/3015:3017, 1/2/3043:3045 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_7QIW_141 | 1/2/3021:3028, 1/2/3033:3039 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_7QIW_142 | 1/2/3050:3054, 1/2/3094:3097 | Major groove minor groove platform with tHH | homologous IL_8C3A_126 NA | |
| IL_7QIW_143 | 1/2/3057:3062, 1/2/3087:3091 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_7QIW_144 | 1/2/3066:3067, 1/2/3080:3083 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_7QIW_145 | 1/2/3106:3110, 1/2/3130:3134 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_7QIW_194 | 1/2/3165:3167, 1/2/3275:3277 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_7QIW_148 | 1/2/3175:3177, 1/2/3206:3207 | Single bulged A | geometric IL_4R4V_004 IL_14190.2 | |
| IL_7QIW_149 | 1/2/3178:3186, 1/2/3200:3205 | No text annotation | ||
| IL_7QIW_150 | 1/2/3220:3224, 1/2/3251:3253 | No text annotation | geometric IL_2OEU_001 IL_46387.3 | |
| IL_7QIW_151 | 1/2/3293:3296, 1/2/3304:3307 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_7QIW_152 | 1/2/3317:3318, 1/2/3374:3377 | Minor groove platform | geometric IL_3RW6_003 IL_24264.1 | |
| IL_7QIW_153 | 1/2/3321:3323, 1/2/3366:3371 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_7QIW_154 | 1/2/3325:3330, 1/2/3360:3364 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_7QIW_155 | 1/2/3333:3335, 1/2/3356:3357 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_7QIW_156 | 1/2/3335:3338, 1/2/3353:3356 | Double sheared | geometric IL_4V9F_100 IL_58355.2 | |
| IL_7QIW_157 | 1/5/15:16, 1/5/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_7QIW_158 | 1/5/20:27, 1/5/52:58 | No text annotation | homologous IL_4WF9_113 IL_19048.1 | |
| IL_7QIW_159 | 1/5/28:29, 1/5/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 NA | |
| IL_7QIW_160 | 1/5/32:36, 1/5/41:45 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_7QIW_161 | 1/5/70:78, 1/5/98:105 | No text annotation | ||
| IL_7QIW_162 | 1/5/82:85, 1/5/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_7QIW_164 | 1/8/49:69, 1/8/101:105 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_7QIW_165 | 1/8/69:70, 1/8/99:101 | No text annotation | ||
| IL_7QIW_166 | 1/8/73:74, 1/8/94:96 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_7QIW_167 | 1/8/124:128, 1/8/137:141 | Double sheared with non-canonical cWW | geometric IL_4WFL_001 IL_87767.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7QIW_168 | No text annotation | ||
| IL_7QIW_016 | Stack and bulge | ||
| IL_7QIW_018 | Intercalated cWW | ||
| IL_7QIW_021 | No text annotation | ||
| IL_7QIW_027 | Tandem non-canonical cWW pairs | ||
| IL_7QIW_033 | No text annotation | ||
| IL_7QIW_044 | Stack and bulge | ||
| IL_7QIW_045 | No text annotation | ||
| IL_7QIW_046 | No text annotation | ||
| IL_7QIW_047 | No text annotation | ||
| IL_7QIW_049 | Minor groove platform with extra cWW | ||
| IL_7QIW_050 | Isolated non-canonical cWW pair | ||
| IL_7QIW_052 | No text annotation | ||
| IL_7QIW_177 | No text annotation | ||
| IL_7QIW_060 | No text annotation | ||
| IL_7QIW_064 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | ||
| IL_7QIW_065 | Not an internal loop | ||
| IL_7QIW_066 | Isolated non-canonical cWW pair | ||
| IL_7QIW_180 | No text annotation | ||
| IL_7QIW_085 | No text annotation | ||
| IL_7QIW_087 | Major groove platform with extra pair | ||
| IL_7QIW_092 | Isolated non-canonical cWW pair | ||
| IL_7QIW_093 | Isolated non-canonical cWW pair | ||
| IL_7QIW_096 | Stack and bulge | ||
| IL_7QIW_100 | No text annotation | ||
| IL_7QIW_101 | No text annotation | ||
| IL_7QIW_102 | Not an internal loop | ||
| IL_7QIW_103 | Not an internal loop | ||
| IL_7QIW_105 | No text annotation | ||
| IL_7QIW_106 | No text annotation | ||
| IL_7QIW_107 | Isolated non-canonical cWW pair | ||
| IL_7QIW_109 | No text annotation | ||
| IL_7QIW_111 | Isolated non-canonical cWW pair | ||
| IL_7QIW_114 | No text annotation | ||
| IL_7QIW_116 | No text annotation | ||
| IL_7QIW_188 | Isolated non-canonical cWW contact | ||
| IL_7QIW_119 | Isolated non-canonical cWW pair | ||
| IL_7QIW_121 | Isolated non-canonical cWW pair | ||
| IL_7QIW_122 | No text annotation | ||
| IL_7QIW_123 | Isolated non-canonical cWW pair | ||
| IL_7QIW_125 | No text annotation | ||
| IL_7QIW_127 | Not an internal loop | ||
| IL_7QIW_130 | No text annotation | ||
| IL_7QIW_132 | Stack and bulge | ||
| IL_7QIW_134 | Not an internal loop | ||
| IL_7QIW_135 | Isolated non-canonical cWW pair | ||
| IL_7QIW_137 | No text annotation | ||
| IL_7QIW_146 | Tandem non-canonical cWW pairs | ||
| IL_7QIW_147 | No text annotation | ||
| IL_7QIW_163 | Isolated cWH basepair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7QIW_001 | 1/2/111:121, 1/2/147:156, 1/2/260:264 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_7QIW_017 | 1/2/111:122, 1/2/142:156, 1/2/260:264 | No text annotation | ||
| J3_7QIW_018 | 1/2/183:186, 1/2/202:211, 1/2/223:227 | No text annotation | ||
| J3_7QIW_019 | 1/2/337:353, 1/2/360:365, 1/8/26:29 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_7QIW_002 | 1/2/366:373, 1/2/400:401, 1/8/24:25 | No text annotation | geometric J3_5TBW_002 NA | |
| J3_7QIW_020 | 1/2/366:376, 1/2/387:401, 1/8/24:25 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_7QIW_021 | 1/2/433:440, 1/2/496:498, 1/2/628:633 | No text annotation | ||
| J3_7QIW_003 | 1/2/436:440, 1/2/496:498, 1/2/628:632 | No text annotation | ||
| J3_7QIW_004 | 1/2/506:508, 1/2/569:579, 1/2/615:620 | No text annotation | ||
| J3_7QIW_005 | 1/2/585:586, 1/2/594:595, 1/2/607:609 | No text annotation | ||
| J3_7QIW_006 | 1/2/824:830, 1/2/915:917, 1/2/933:936 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_7QIW_007 | 1/2/839:841, 1/2/873:877, 1/2/902:905 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_7QIW_022 | 1/2/998:999, 1/2/1074:1078, 1/2/1104:1109 | No text annotation | ||
| J3_7QIW_008 | 1/2/1490:1496, 1/2/1863:1865, 1/2/1877:1880 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_7QIW_023 | 1/2/1499:1502, 1/2/1843:1849, 1/2/1858:1860 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_7QIW_024 | 1/2/1537:1542, 1/2/1596:1600, 1/2/1617:1618 | No text annotation | homologous J3_8P9A_055 J3_94309.1 | |
| J3_7QIW_010 | 1/2/1549:1551, 1/2/1567:1571, 1/2/1583:1587 | No text annotation | ||
| J3_7QIW_011 | 1/2/1635:1636, 1/2/1645:1649, 1/2/1816:1817 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_7QIW_025 | 1/2/1658:1662, 1/2/1797:1798, 1/2/1802:1807 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_7QIW_026 | 1/2/2434:2438, 1/2/2517:2521, 1/2/2595:2602 | No text annotation | ||
| J3_7QIW_027 | 1/2/2655:2657, 1/2/2758:2769, 1/2/2797:2802 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_7QIW_013 | 1/2/2668:2670, 1/2/2694:2696, 1/2/2705:2710 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_7QIW_014 | 1/2/2890:2893, 1/2/2918:2920, 1/2/2934:2940 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_7QIW_028 | 1/2/3172:3175, 1/2/3207:3218, 1/2/3255:3271 | No text annotation | ||
| J3_7QIW_029 | 1/5/9:14, 1/5/65:66, 1/5/109:110 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_7QIW_030 | 1/8/49:50, 1/8/63:69, 1/8/101:105 | No text annotation | homologous J3_8C3A_060 NA | |
| J4_7QIW_001 | 1/2/110:111, 1/2/264:269, 1/2/290:296, 1/2/313:316 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_7QIW_002 | 1/2/183:186, 1/2/202:205, 1/2/209:211, 1/2/223:227 | No text annotation | ||
| J4_7QIW_003 | 1/2/1462:1468, 1/2/1486:1487, 1/2/1883:1886, 1/2/2355:2356 | No text annotation | homologous J4_8C3A_003 NA | |
| J4_7QIW_004 | 1/2/1503:1507, 1/2/1531:1536, 1/2/1619:1620, 1/2/1835:1842 | No text annotation | homologous J4_8P9A_015 J4_47264.1 | |
| J4_7QIW_005 | 1/2/1678:1679, 1/2/1697:1698, 1/2/1757:1758, 1/2/1778:1779 | No text annotation | homologous J4_8C3A_005 NA | |
| J4_7QIW_006 | 1/2/2134:2138, 1/2/2150:2154, 1/2/2189:2193, 1/2/2320:2325 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_7QIW_007 | 1/2/2195:2197, 1/2/2251:2252, 1/2/2270:2279, 1/2/2313:2318 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_7QIW_008 | 1/2/2658:2662, 1/2/2716:2718, 1/2/2745:2746, 1/2/2755:2757 | No text annotation | ||
| J4_7QIW_009 | 1/2/2658:2662, 1/2/2716:2720, 1/2/2744:2746, 1/2/2755:2757 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_7QIW_010 | 1/2/3013:3015, 1/2/3045:3046, 1/2/3101:3103, 1/2/3137:3139 | No text annotation | homologous J4_8P9A_020 J4_37757.1 | |
| J5_7QIW_001 | 1/2/18:20, 1/8/40:47, 1/8/107:112, 1/8/120:121, 1/8/144:146 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_7QIW_002 | 1/2/669:674, 1/2/809:812, 1/2/951:954, 1/2/1387:1388, 1/2/1442:1448 | No text annotation | homologous J5_8P9A_011 J5_08384.1 | |
| J5_7QIW_003 | 1/2/686:689, 1/2/715:719, 1/2/726:731, 1/2/759:761, 1/2/792:797 | No text annotation | ||
| J5_7QIW_004 | 1/2/1912:1920, 1/2/1944:1945, 1/2/2113:2114, 1/2/2118:2126, 1/2/2334:2336 | No text annotation | homologous J5_8P9A_013 J5_99177.1 | |
| J5_7QIW_005 | 1/2/2402:2409, 1/2/2819:2827, 1/2/2871:2880, 1/2/2955:2961, 1/2/2979:2984 | No text annotation | ||
| J5_7QIW_006 | 1/2/2419:2422, 1/2/2615:2618, 1/2/2631:2632, 1/2/2654:2655, 1/2/2802:2808 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J6_7QIW_001 | 1/2/20:25, 1/2/56:66, 1/2/73:77, 1/2/104:108, 1/2/318:328, 1/8/37:40 | No text annotation | ||
| J6_7QIW_002 | 1/2/2419:2422, 1/2/2615:2618, 1/2/2631:2632, 1/2/2654:2657, 1/2/2758:2769, 1/2/2797:2808 | No text annotation | ||
| J7_7QIW_001 | 1/2/959:964, 1/2/977:978, 1/2/1125:1128, 1/2/1152:1157, 1/2/1168:1172, 1/2/1350:1351, 1/2/1377:1382 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7QIW_009 | No text annotation | ||
| J3_7QIW_012 | No text annotation | ||
| J3_7QIW_015 | No text annotation | ||
| J3_7QIW_016 | No text annotation |
Coloring options: