HL_7QIW_011

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UGAAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIW_011 not in the Motif Atlas

Geometric match to HL_5B2T_001

Geometric discrepancy: 0.0939

The information below is about HL_5B2T_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

7QIW|1|2|U|379
7QIW|1|2|G|380
7QIW|1|2|A|381
7QIW|1|2|A|382
7QIW|1|2|A|383
7QIW|1|2|A|384

Current chains

Chain 2

25S rRNA

Nearby chains

Chain R

50S ribosomal protein L22, chloroplastic