HL_7QIW_019

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CCUGAG

Length

6 nucleotides

Bulged bases

7QIW|1|2|A|746

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIW_019 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2608

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

7QIW|1|2|C|742
7QIW|1|2|C|743
7QIW|1|2|U|744
7QIW|1|2|G|745
7QIW|1|2|A|746
7QIW|1|2|G|747

Current chains

Chain 2

25S rRNA

Nearby chains

Chain I

Thaliana 60S ribosomal protein L7

Chain V

60S ribosomal protein eL21