HL_7QIW_040

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

7QIW|1|2|C|1872

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIW_040 not in the Motif Atlas

Homologous match to HL_8C3A_042

Geometric discrepancy: 0.1374

The information below is about HL_8C3A_042

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7QIW|1|2|U|1868
7QIW|1|2|G|1869
7QIW|1|2|A|1870
7QIW|1|2|A|1871
7QIW|1|2|C|1872
7QIW|1|2|A|1873
7QIW|1|2|G|1874

Current chains

Chain 2

25S rRNA

Nearby chains

Chain T

Ribosomal protein L19