HL_7QIW_050

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GCUUCGC

Length

7 nucleotides

Bulged bases

7QIW|1|2|U|2573, 7QIW|1|2|C|2575

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIW_050 not in the Motif Atlas

Geometric match to HL_5J7L_018

Geometric discrepancy: 0.3316

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

7QIW|1|2|G|2571
7QIW|1|2|C|2572
7QIW|1|2|U|2573
7QIW|1|2|U|2574
7QIW|1|2|C|2575
7QIW|1|2|G|2576
7QIW|1|2|C|2577

Current chains

Chain 2

25S rRNA

Nearby chains

Chain b

60S ribosomal protein L27