HL_7QIW_064

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

7QIW|1|2|G|3119, 7QIW|1|2|C|3123

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIW_064 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.1825

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7QIW|1|2|C|3113
7QIW|1|2|PSU|3114
7QIW|1|2|G|3115
7QIW|1|2|A|3116
7QIW|1|2|A|3117
7QIW|1|2|C|3118
7QIW|1|2|G|3119
7QIW|1|2|C|3120
7QIW|1|2|C|3121
7QIW|1|2|U|3122
7QIW|1|2|C|3123
7QIW|1|2|U|3124
7QIW|1|2|A|3125
7QIW|1|2|A|3126
7QIW|1|2|G|3127

Current chains

Chain 2

25S rRNA

Nearby chains

Chain K

60S ribosomal protein uL6

Chain Q

60S ribosomal protein uL13

Chain o

Ubiquitin-like domain-containing protein