HL_7QIW_066

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GCAGACGAC

Length

9 nucleotides

Bulged bases

7QIW|1|2|C|3297

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIW_066 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.077

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

7QIW|1|2|G|3296
7QIW|1|2|C|3297
7QIW|1|2|A|3298
7QIW|1|2|G|3299
7QIW|1|2|A|3300
7QIW|1|2|C|3301
7QIW|1|2|G|3302
7QIW|1|2|A|3303
7QIW|1|2|C|3304

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain R

50S ribosomal protein L22, chloroplastic