HL_7QIW_074

3D structure

PDB id

7QIW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CGGCACUUG

Length

9 nucleotides

Bulged bases

7QIW|1|2|G|1518, 7QIW|1|2|U|1522

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIW_074 not in the Motif Atlas

Geometric match to HL_1KH6_003

Geometric discrepancy: 0.3591

The information below is about HL_1KH6_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

7QIW|1|2|C|1516
7QIW|1|2|G|1517
7QIW|1|2|G|1518
7QIW|1|2|C|1519
7QIW|1|2|A|1520
7QIW|1|2|C|1521
7QIW|1|2|U|1522
7QIW|1|2|U|1523
7QIW|1|2|G|1524

Current chains

Chain 2

25S rRNA

Nearby chains

Chain R

50S ribosomal protein L22, chloroplastic

Chain T

Ribosomal protein L19

Chain n

60S ribosomal protein eL39