HL_7QIZ_005

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUGGAAGG

Length

8 nucleotides

Bulged bases

7QIZ|1|2|G|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.0865

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

7QIZ|1|2|C|191
7QIZ|1|2|U|192
7QIZ|1|2|G|193
7QIZ|1|2|G|194
7QIZ|1|2|A|195
7QIZ|1|2|A|196
7QIZ|1|2|G|197
7QIZ|1|2|G|198

Current chains

Chain 2

25S rRNA

Nearby chains

Chain a

KOW domain-containing protein

Chain g

60S ribosomal protein eL32