7QIZ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7QIZ_001 | 1/2/36:43 | No text annotation | homologous HL_8C3A_001 NA | |
| HL_7QIZ_002 | 1/2/67:72 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_7QIZ_003 | 1/2/88:94 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_7QIZ_004 | 1/2/130:134 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_7QIZ_005 | 1/2/191:198 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_7QIZ_006 | 1/2/205:209 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_7QIZ_007 | 1/2/213:221 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_7QIZ_008 | 1/2/275:284 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_7QIZ_009 | 1/2/300:309 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_7QIZ_010 | 1/2/354:359 | GNRA | homologous HL_8C3A_010 NA | |
| HL_7QIZ_011 | 1/2/379:384 | GNRA | homologous HL_8C3A_011 NA | |
| HL_7QIZ_013 | 1/2/534:544 | No text annotation | ||
| HL_7QIZ_014 | 1/2/588:592 | Mini UNCG | geometric HL_4V9F_021 HL_90436.3 | |
| HL_7QIZ_015 | 1/2/598:603 | UNCG | geometric HL_5J7L_175 NA | |
| HL_7QIZ_106 | 1/2/651:660 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_7QIZ_017 | 1/2/697:706 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_7QIZ_018 | 1/2/720:725 | GNRA | homologous HL_8C3A_016 NA | |
| HL_7QIZ_019 | 1/2/742:747 | No text annotation | geometric HL_5U3G_001 HL_75660.8 | |
| HL_7QIZ_020 | 1/2/773:778 | No text annotation | homologous HL_8C3A_018 NA | |
| HL_7QIZ_021 | 1/2/854:859 | GNRA | homologous HL_8C3A_019 NA | |
| HL_7QIZ_107 | 1/2/886:895 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_7QIZ_023 | 1/2/920:928 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_7QIZ_024 | 1/2/968:973 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_7QIZ_025 | 1/2/1088:1095 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_7QIZ_026 | 1/2/1137:1143 | GNRA | geometric HL_5TBW_025 NA | |
| HL_7QIZ_027 | 1/2/1159:1166 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_7QIZ_028 | 1/2/1359:1369 | Mini UNCG | geometric HL_4OOG_001 HL_12626.2 | |
| HL_7QIZ_029 | 1/2/1414:1419 | GNRA | homologous HL_8C3A_030 NA | |
| HL_7QIZ_030 | 1/2/1473:1481 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_7QIZ_031 | 1/2/1517:1523 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_7QIZ_032 | 1/2/1555:1560 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_7QIZ_034 | 1/2/1604:1613 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_7QIZ_035 | 1/2/1638:1643 | GNRA | homologous HL_8C3A_036 NA | |
| HL_7QIZ_036 | 1/2/1684:1692 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_7QIZ_037 | 1/2/1724:1730 | No text annotation | geometric HL_5HR7_005 HL_50006.5 | |
| HL_7QIZ_039 | 1/2/1798:1802 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_7QIZ_109 | 1/2/1850:1857 | No text annotation | geometric HL_8C3A_041 NA | |
| HL_7QIZ_040 | 1/2/1868:1874 | GNRA | homologous HL_8C3A_042 NA | |
| HL_7QIZ_041 | 1/2/1929:1934 | UNCG | homologous HL_8C3A_043 NA | |
| HL_7QIZ_043 | 1/2/2114:2118 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_7QIZ_110 | 1/2/2139:2149 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_7QIZ_045 | 1/2/2168:2173 | GNRA | homologous HL_8C3A_047 NA | |
| HL_7QIZ_111 | 1/2/2223:2228 | GNRA | homologous HL_8P9A_159 HL_34789.4 | |
| HL_7QIZ_047 | 1/2/2256:2266 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_7QIZ_048 | 1/2/2295:2303 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_7QIZ_049 | 1/2/2372:2381 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_7QIZ_050 | 1/2/2571:2577 | No text annotation | geometric HL_5J7L_018 NA | |
| HL_7QIZ_051 | 1/2/2620:2628 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_7QIZ_052 | 1/2/2637:2649 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_7QIZ_053 | 1/2/2677:2685 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_7QIZ_054 | 1/2/2697:2704 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_7QIZ_055 | 1/2/2728:2736 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_7QIZ_112 | 1/2/2748:2753 | GNRA | homologous HL_8C3A_060 NA | |
| HL_7QIZ_057 | 1/2/2780:2788 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_7QIZ_058 | 1/2/2844:2852 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_7QIZ_059 | 1/2/2901:2908 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_7QIZ_060 | 1/2/2924:2930 | No text annotation | geometric HL_5TBW_063 NA | |
| HL_7QIZ_061 | 1/2/2967:2972 | GNRA | homologous HL_8C3A_065 NA | |
| HL_7QIZ_062 | 1/2/3028:3033 | GNRA | geometric HL_5J7L_197 NA | |
| HL_7QIZ_063 | 1/2/3071:3076 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_7QIZ_064 | 1/2/3113:3127 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_7QIZ_065 | 1/2/3234:3241 | No text annotation | homologous HL_8C3A_070 NA | |
| HL_7QIZ_066 | 1/2/3296:3304 | No text annotation | geometric HL_5TBW_070 NA | |
| HL_7QIZ_113 | 1/5/32:45 | No text annotation | homologous HL_4V9F_074 HL_97756.3 | |
| HL_7QIZ_068 | 1/5/36:41 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_7QIZ_069 | 1/5/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_7QIZ_114 | 1/8/52:61 | No text annotation | homologous HL_8P4V_072 NA | |
| HL_7QIZ_070 | 1/8/74:94 | No text annotation | homologous HL_8C3A_230 NA | |
| HL_7QIZ_071 | 1/8/113:119 | No text annotation | geometric HL_5TBW_075 NA | |
| HL_7QIZ_072 | 1/S2/7:17 | No text annotation | geometric HL_4V88_186 NA | |
| HL_7QIZ_074 | 1/S2/152:158 | GNRA variation | geometric HL_4QK9_001 HL_34789.4 | |
| HL_7QIZ_115 | 1/S2/246:253 | T-loop with 1 bulged base | homologous HL_8P9A_195 HL_67772.1 | |
| HL_7QIZ_078 | 1/S2/334:342 | GNRA related | geometric HL_4V88_193 NA | |
| HL_7QIZ_079 | 1/S2/372:377 | No text annotation | geometric HL_4V88_194 NA | |
| HL_7QIZ_080 | 1/S2/397:408 | No text annotation | geometric HL_4V88_195 NA | |
| HL_7QIZ_116 | 1/S2/418:423 | UNCG | homologous HL_8C3A_202 NA | |
| HL_7QIZ_082 | 1/S2/454:460 | No text annotation | geometric HL_5NFV_001 HL_69752.4 | |
| HL_7QIZ_084 | 1/S2/523:535 | No text annotation | geometric HL_4V88_199 NA | |
| HL_7QIZ_085 | 1/S2/572:577 | GNRA variation | geometric HL_4V88_200 NA | |
| HL_7QIZ_086 | 1/S2/768:776 | No text annotation | geometric HL_4V88_203 NA | |
| HL_7QIZ_087 | 1/S2/781:786 | No text annotation | geometric HL_7A0S_007 HL_51020.2 | |
| HL_7QIZ_117 | 1/S2/903:912 | No text annotation | homologous HL_8C3A_211 NA | |
| HL_7QIZ_090 | 1/S2/940:945 | GNRA | geometric HL_4V88_207 NA | |
| HL_7QIZ_091 | 1/S2/1000:1010 | No text annotation | geometric HL_5J7L_017 NA | |
| HL_7QIZ_093 | 1/S2/1087:1092 | GNRA | geometric HL_4V88_210 NA | |
| HL_7QIZ_094 | 1/S2/1124:1129 | GNRA | geometric HL_4LFB_020 HL_34789.4 | |
| HL_7QIZ_095 | 1/S2/1191:1200 | No text annotation | homologous HL_8P9A_215 HL_97521.1 | |
| HL_7QIZ_096 | 1/S2/1240:1249 | No text annotation | ||
| HL_7QIZ_118 | 1/S2/1299:1304 | GNRA | homologous HL_8P9A_217 HL_34789.4 | |
| HL_7QIZ_098 | 1/S2/1312:1319 | T-loop related | geometric HL_4LFB_025 HL_63894.2 | |
| HL_7QIZ_100 | 1/S2/1401:1407 | GNRA | geometric HL_1U6B_001 HL_34789.4 | |
| HL_7QIZ_101 | 1/S2/1508:1513 | GNRA | geometric HL_1RLG_002 HL_34789.4 | |
| HL_7QIZ_119 | 1/S2/1556:1567 | No text annotation | homologous HL_8C3A_224 NA | |
| HL_7QIZ_103 | 1/S2/1600:1608 | No text annotation | geometric HL_4V88_220 NA | |
| HL_7QIZ_105 | 1/S2/1786:1791 | GNRA variation | geometric HL_4V88_222 NA | |
| HL_7QIZ_120 | 1/aA/3:11 | tRNA anticodon loop | geometric HL_6CFJ_107 HL_81376.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7QIZ_012 | No text annotation | ||
| HL_7QIZ_016 | No text annotation | ||
| HL_7QIZ_022 | No text annotation | ||
| HL_7QIZ_033 | No text annotation | ||
| HL_7QIZ_108 | tRNA D-loop | ||
| HL_7QIZ_038 | No text annotation | ||
| HL_7QIZ_042 | No text annotation | ||
| HL_7QIZ_044 | No text annotation | ||
| HL_7QIZ_046 | GNRA with extra near cWW | ||
| HL_7QIZ_056 | GNRA with extra cWW | ||
| HL_7QIZ_067 | Mini UNCG | ||
| HL_7QIZ_073 | No text annotation | ||
| HL_7QIZ_075 | No text annotation | ||
| HL_7QIZ_076 | No text annotation | ||
| HL_7QIZ_077 | Mini UNCG | ||
| HL_7QIZ_081 | No text annotation | ||
| HL_7QIZ_083 | No text annotation | ||
| HL_7QIZ_088 | No text annotation | ||
| HL_7QIZ_089 | No text annotation | ||
| HL_7QIZ_092 | No text annotation | ||
| HL_7QIZ_097 | GNRA with extra near cWW | ||
| HL_7QIZ_099 | No text annotation | ||
| HL_7QIZ_102 | No text annotation | ||
| HL_7QIZ_104 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7QIZ_001 | 1/2/1:3, 1/8/161:163 | Isolated non-canonical cWW pair | geometric IL_4WF9_083 IL_01003.4 | |
| IL_7QIZ_002 | 1/2/5:6, 1/8/157:159 | No text annotation | ||
| IL_7QIZ_003 | 1/2/11:13, 1/8/151:152 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_7QIZ_004 | 1/2/25:26, 1/2/54:56 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_7QIZ_005 | 1/2/29:36, 1/2/43:51 | tSH-tHW-tHH-tHS | geometric IL_5TBW_005 NA | |
| IL_7QIZ_006 | 1/2/80:88, 1/2/94:101 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_93502.1 | |
| IL_7QIZ_007 | 1/2/121:122, 1/2/142:147 | No text annotation | geometric IL_5TBW_007 NA | |
| IL_7QIZ_008 | 1/2/157:158, 1/2/257:259 | Minor groove platform | geometric IL_6DLR_003 IL_34520.3 | |
| IL_7QIZ_009 | 1/2/162:164, 1/2/252:253 | Major groove platform | geometric IL_1G1X_005 NA | |
| IL_7QIZ_010 | 1/2/166:168, 1/2/244:250 | No text annotation | ||
| IL_7QIZ_011 | 1/2/174:176, 1/2/234:238 | No text annotation | geometric IL_7ENI_001 IL_70784.1 | |
| IL_7QIZ_012 | 1/2/181:183, 1/2/227:229 | Isolated non-canonical cWW pair | geometric IL_5TBW_021 NA | |
| IL_7QIZ_013 | 1/2/186:188, 1/2/201:202 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_7QIZ_014 | 1/2/334:336, 1/8/30:31 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_7QIZ_015 | 1/2/373:376, 1/2/387:400 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_7QIZ_017 | 1/2/401:407, 1/8/18:24 | Triple sheared with non-canonical cWW | geometric IL_5TBW_015 NA | |
| IL_7QIZ_258 | 1/2/430:431, 1/2/635:637 | Single bulged U | geometric IL_6JQ6_006 IL_97561.5 | |
| IL_7QIZ_019 | 1/2/433:436, 1/2/632:633 | Stack outside cWW | geometric IL_4KZD_006 IL_77710.1 | |
| IL_7QIZ_020 | 1/2/447:448, 1/2/487:489 | Single bulged U | geometric IL_7KVT_002 IL_97561.5 | |
| IL_7QIZ_022 | 1/2/459:461, 1/2/473:475 | Isolated non-canonical cWW pair | geometric IL_5TBW_127 NA | |
| IL_7QIZ_023 | 1/2/498:500, 1/2/626:628 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_01003.4 | |
| IL_7QIZ_024 | 1/2/522:528, 1/2/551:555 | Partly complementary | geometric IL_8D29_010 IL_71154.3 | |
| IL_7QIZ_025 | 1/2/529:530, 1/2/548:550 | Single bulged U | geometric IL_3D2V_001 IL_97561.5 | |
| IL_7QIZ_026 | 1/2/595:597, 1/2/604:607 | Isolated non-canonical cWW pair | geometric IL_3TD0_001 NA | |
| IL_7QIZ_259 | 1/2/679:681, 1/2/802:804 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_7QIZ_028 | 1/2/691:695, 1/2/708:713 | No text annotation | ||
| IL_7QIZ_029 | 1/2/735:739, 1/2/750:755 | Triple sheared related | geometric IL_4V9F_018 IL_67427.1 | |
| IL_7QIZ_030 | 1/2/762:763, 1/2/789:791 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_7QIZ_031 | 1/2/765:766, 1/2/785:787 | Single bulged U | homologous IL_8C3A_027 NA | |
| IL_7QIZ_032 | 1/2/767:772, 1/2/779:784 | No text annotation | ||
| IL_7QIZ_260 | 1/2/813:815, 1/2/948:950 | Isolated non-canonical cWW pair | homologous IL_8P9A_255 IL_01003.4 | |
| IL_7QIZ_261 | 1/2/815:819, 1/2/941:948 | No text annotation | homologous IL_8P9A_256 IL_73855.1 | |
| IL_7QIZ_034 | 1/2/838:839, 1/2/905:907 | Single bulged A | homologous IL_8C3A_031 NA | |
| IL_7QIZ_035 | 1/2/843:844, 1/2/869:871 | Single bulged G | geometric IL_4WF9_023 IL_28408.2 | |
| IL_7QIZ_036 | 1/2/844:848, 1/2/865:869 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_7QIZ_037 | 1/2/879:882, 1/2/898:900 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_7QIZ_038 | 1/2/883:885, 1/2/896:897 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_7QIZ_039 | 1/2/917:919, 1/2/929:933 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_7QIZ_040 | 1/2/964:966, 1/2/975:977 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_7QIZ_041 | 1/2/979:980, 1/2/1122:1124 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_7QIZ_042 | 1/2/987:994, 1/2/1112:1115 | No text annotation | ||
| IL_7QIZ_043 | 1/2/995:997, 1/2/1110:1111 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_7QIZ_262 | 1/2/1003:1009, 1/2/1064:1070 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_8P9A_266 IL_94128.1 | |
| IL_7QIZ_263 | 1/2/1009:1010, 1/2/1062:1064 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_7QIZ_264 | 1/2/1011:1016, 1/2/1058:1061 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_7QIZ_303 | 1/2/1018:1021, 1/2/1053:1056 | Tandem non-canonical cWW pairs | homologous IL_8P9A_269 IL_71194.2 | |
| IL_7QIZ_048 | 1/2/1021:1023, 1/2/1051:1053 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_7QIZ_304 | 1/2/1025:1028, 1/2/1048:1049 | Major groove minor groove platform; mini C-loop | geometric IL_8C3A_430 NA | |
| IL_7QIZ_051 | 1/2/1086:1088, 1/2/1095:1096 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_7QIZ_265 | 1/2/1131:1133, 1/2/1147:1149 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 IL_01003.4 | |
| IL_7QIZ_053 | 1/2/1178:1182, 1/2/1340:1344 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_7QIZ_054 | 1/2/1184:1191, 1/2/1337:1338 | SSU/LSU pseudoknot | geometric IL_4V9F_038 IL_11411.1 | |
| IL_7QIZ_055 | 1/2/1191:1193, 1/2/1336:1337 | Single bulged U | homologous IL_8C3A_053 NA | |
| IL_7QIZ_056 | 1/2/1198:1206, 1/2/1326:1331 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_7QIZ_057 | 1/2/1206:1217, 1/2/1311:1326 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_7QIZ_058 | 1/2/1219:1221, 1/2/1308:1309 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_7QIZ_059 | 1/2/1226:1228, 1/2/1301:1303 | Isolated non-canonical cWW pair | geometric IL_4LFB_061 NA | |
| IL_7QIZ_267 | 1/2/1230:1238, 1/2/1295:1299 | Kink-turn | homologous IL_8P9A_282 IL_99692.3 | |
| IL_7QIZ_061 | 1/2/1388:1390, 1/2/1439:1442 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_7QIZ_062 | 1/2/1399:1407, 1/2/1425:1430 | No text annotation | ||
| IL_7QIZ_063 | 1/2/1409:1411, 1/2/1422:1423 | Single bulged U | geometric IL_5TBW_134 NA | |
| IL_7QIZ_268 | 1/2/1455:1461, 1/2/2357:2362 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8P9A_289 IL_02666.1 | |
| IL_7QIZ_067 | 1/2/1499:1502, 1/2/1843:1860 | No text annotation | ||
| IL_7QIZ_068 | 1/2/1512:1516, 1/2/1524:1526 | Minor groove platform | geometric IL_4LFB_037 IL_61370.1 | |
| IL_7QIZ_069 | 1/2/1543:1547, 1/2/1590:1595 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_7QIZ_070 | 1/2/1548:1549, 1/2/1587:1589 | Single bulged U | geometric IL_6UFG_004 IL_97561.5 | |
| IL_7QIZ_071 | 1/2/1551:1552, 1/2/1565:1567 | No text annotation | ||
| IL_7QIZ_072 | 1/2/1552:1553, 1/2/1562:1565 | Major groove platform | geometric IL_4WF9_094 IL_46637.2 | |
| IL_7QIZ_073 | 1/2/1623:1625, 1/2/1831:1832 | Single stack bend | geometric IL_4WF9_007 IL_15011.3 | |
| IL_7QIZ_074 | 1/2/1628:1629, 1/2/1826:1828 | Single bulged C | geometric IL_3HHN_003 IL_05642.3 | |
| IL_7QIZ_075 | 1/2/1632:1635, 1/2/1817:1823 | No text annotation | ||
| IL_7QIZ_076 | 1/2/1649:1653, 1/2/1812:1816 | Triple sheared | geometric IL_7RQB_075 NA | |
| IL_7QIZ_077 | 1/2/1665:1667, 1/2/1792:1794 | Isolated cWH basepair | geometric IL_5F5F_003 IL_10892.2 | |
| IL_7QIZ_078 | 1/2/1673:1674, 1/2/1784:1786 | Single bulged C | geometric IL_5TBW_069 NA | |
| IL_7QIZ_079 | 1/2/1674:1675, 1/2/1782:1784 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_7QIZ_080 | 1/2/1679:1681, 1/2/1695:1697 | Isolated non-canonical cWW pair | geometric IL_5UNE_007 IL_01003.4 | |
| IL_7QIZ_081 | 1/2/1698:1702, 1/2/1752:1757 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_7QIZ_082 | 1/2/1706:1707, 1/2/1746:1748 | Single bulged C | geometric IL_1DQH_001 NA | |
| IL_7QIZ_083 | 1/2/1707:1712, 1/2/1742:1746 | No text annotation | ||
| IL_7QIZ_084 | 1/2/1716:1722, 1/2/1732:1738 | No text annotation | homologous IL_8C3A_079 NA | |
| IL_7QIZ_270 | 1/2/1889:1895, 1/2/2349:2352 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_7QIZ_086 | 1/2/1901:1903, 1/2/2341:2343 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_7QIZ_271 | 1/2/1904:1907, 1/2/2339:2340 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_7QIZ_272 | 1/2/1904:1912, 1/2/2336:2340 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_7QIZ_088 | 1/2/1907:1912, 1/2/2336:2339 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_7QIZ_089 | 1/2/1924:1929, 1/2/1934:1940 | tSH-tSH-tHH-tHS | geometric IL_4V9F_063 IL_20700.1 | |
| IL_7QIZ_090 | 1/2/1946:1948, 1/2/2110:2112 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_7QIZ_091 | 1/2/1953:1954, 1/2/2102:2105 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_7QIZ_094 | 1/2/2132:2133, 1/2/2326:2328 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_7QIZ_095 | 1/2/2160:2165, 1/2/2176:2183 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_7QIZ_097 | 1/2/2199:2202, 1/2/2248:2249 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_7QIZ_098 | 1/2/2203:2204, 1/2/2244:2247 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_7QIZ_099 | 1/2/2207:2209, 1/2/2240:2241 | Single stack bend | geometric IL_7A0S_054 IL_15011.3 | |
| IL_7QIZ_273 | 1/2/2214:2220, 1/2/2231:2237 | No text annotation | homologous IL_8P9A_316 IL_65359.1 | |
| IL_7QIZ_104 | 1/2/2279:2280, 1/2/2310:2313 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_7QIZ_274 | 1/2/2280:2291, 1/2/2307:2310 | No text annotation | homologous IL_8P9A_318 IL_84014.1 | |
| IL_7QIZ_275 | 1/2/2394:2397, 1/2/2990:2992 | No text annotation | homologous IL_8P9A_319 IL_75527.2 | |
| IL_7QIZ_108 | 1/2/2399:2401, 1/2/2985:2988 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_7QIZ_276 | 1/2/2412:2414, 1/2/2815:2816 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_7QIZ_110 | 1/2/2415:2416, 1/2/2811:2814 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_7QIZ_112 | 1/2/2426:2428, 1/2/2608:2611 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_7QIZ_113 | 1/2/2430:2432, 1/2/2604:2606 | Isolated non-canonical cWW pair | geometric IL_5AY2_003 IL_01003.4 | |
| IL_7QIZ_115 | 1/2/2525:2531, 1/2/2588:2591 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_7QIZ_117 | 1/2/2618:2619, 1/2/2629:2631 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_7QIZ_118 | 1/2/2670:2672, 1/2/2690:2694 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_7QIZ_120 | 1/2/2718:2720, 1/2/2744:2745 | Single bulged A | geometric IL_5TBW_013 NA | |
| IL_7QIZ_278 | 1/2/2722:2725, 1/2/2739:2742 | Tandem non-canonical cWW pairs | homologous IL_8P9A_327 IL_15225.2 | |
| IL_7QIZ_124 | 1/2/2774:2777, 1/2/2791:2792 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_7QIZ_279 | 1/2/2827:2828, 1/2/2869:2871 | Major groove platform | homologous IL_8P9A_329 IL_48076.8 | |
| IL_7QIZ_280 | 1/2/2828:2830, 1/2/2867:2869 | Isolated non-canonical cWW pair | homologous IL_8P9A_330 IL_01003.4 | |
| IL_7QIZ_281 | 1/2/2830:2832, 1/2/2866:2867 | No text annotation | homologous IL_8P9A_331 IL_46637.2 | |
| IL_7QIZ_126 | 1/2/2832:2834, 1/2/2862:2866 | Major groove minor groove platform with extra cWW | geometric IL_5TBW_105 NA | |
| IL_7QIZ_128 | 1/2/2839:2843, 1/2/2853:2857 | Double sheared with non-canonical cWW | geometric IL_7A0S_087 IL_87767.2 | |
| IL_7QIZ_129 | 1/2/2880:2881, 1/2/2953:2955 | Major groove platform | geometric IL_5TBW_107 NA | |
| IL_7QIZ_282 | 1/2/2883:2885, 1/2/2947:2951 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_7QIZ_131 | 1/2/2885:2886, 1/2/2944:2947 | Multiple bulged bases | geometric IL_5TBW_109 NA | |
| IL_7QIZ_133 | 1/2/2895:2897, 1/2/2912:2916 | No text annotation | geometric IL_3DD2_004 IL_09353.1 | |
| IL_7QIZ_136 | 1/2/2922:2924, 1/2/2930:2932 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_7QIZ_138 | 1/2/2964:2965, 1/2/2974:2976 | Single bulged A | geometric IL_4WF9_002 IL_14190.2 | |
| IL_7QIZ_139 | 1/2/3007:3010, 1/2/3142:3146 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_7QIZ_140 | 1/2/3015:3017, 1/2/3043:3045 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_7QIZ_141 | 1/2/3021:3028, 1/2/3033:3039 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_7QIZ_142 | 1/2/3050:3054, 1/2/3094:3097 | Major groove minor groove platform with tHH | homologous IL_8C3A_126 NA | |
| IL_7QIZ_143 | 1/2/3057:3062, 1/2/3087:3091 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_7QIZ_144 | 1/2/3066:3067, 1/2/3080:3083 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_7QIZ_145 | 1/2/3106:3110, 1/2/3130:3134 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_7QIZ_283 | 1/2/3165:3167, 1/2/3275:3277 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_7QIZ_148 | 1/2/3175:3177, 1/2/3206:3207 | Single bulged A | geometric IL_4R4V_004 IL_14190.2 | |
| IL_7QIZ_149 | 1/2/3178:3186, 1/2/3200:3205 | No text annotation | ||
| IL_7QIZ_150 | 1/2/3220:3224, 1/2/3251:3253 | No text annotation | geometric IL_2OEU_001 IL_46387.3 | |
| IL_7QIZ_151 | 1/2/3293:3296, 1/2/3304:3307 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_7QIZ_152 | 1/2/3317:3318, 1/2/3374:3377 | Minor groove platform | geometric IL_3RW6_003 IL_24264.1 | |
| IL_7QIZ_153 | 1/2/3321:3323, 1/2/3366:3371 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_7QIZ_154 | 1/2/3325:3330, 1/2/3360:3364 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_7QIZ_155 | 1/2/3333:3335, 1/2/3356:3357 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_7QIZ_156 | 1/2/3335:3338, 1/2/3353:3356 | Double sheared | geometric IL_4V9F_100 IL_58355.2 | |
| IL_7QIZ_157 | 1/5/15:16, 1/5/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_7QIZ_158 | 1/5/20:27, 1/5/52:58 | No text annotation | homologous IL_4WF9_113 IL_19048.1 | |
| IL_7QIZ_159 | 1/5/28:29, 1/5/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 NA | |
| IL_7QIZ_160 | 1/5/32:36, 1/5/41:45 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_7QIZ_161 | 1/5/70:78, 1/5/98:105 | No text annotation | ||
| IL_7QIZ_162 | 1/5/82:85, 1/5/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_7QIZ_164 | 1/8/49:69, 1/8/101:105 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_7QIZ_165 | 1/8/69:70, 1/8/99:101 | No text annotation | ||
| IL_7QIZ_166 | 1/8/73:74, 1/8/94:96 | Single bulged C | geometric IL_1DQF_001 NA | |
| IL_7QIZ_167 | 1/8/124:128, 1/8/137:141 | Double sheared with non-canonical cWW | geometric IL_4WFL_001 IL_87767.2 | |
| IL_7QIZ_284 | 1/S2/24:26, 1/S2/603:604 | Single bulged C | homologous IL_8P9A_373 IL_05642.3 | |
| IL_7QIZ_171 | 1/S2/35:37, 1/S2/475:477 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_7QIZ_172 | 1/S2/37:41, 1/S2/470:475 | Triple sheared related | geometric IL_4V88_386 NA | |
| IL_7QIZ_173 | 1/S2/42:48, 1/S2/435:437 | No text annotation | geometric IL_4V88_387 NA | |
| IL_7QIZ_174 | 1/S2/50:52, 1/S2/432:433 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_7QIZ_175 | 1/S2/58:63, 1/S2/88:90 | No text annotation | geometric IL_4V88_389 NA | |
| IL_7QIZ_176 | 1/S2/64:69, 1/S2/83:87 | No text annotation | geometric IL_4V88_390 NA | |
| IL_7QIZ_285 | 1/S2/110:113, 1/S2/306:309 | Tandem non-canonical cWW pairs | homologous IL_8C3A_399 NA | |
| IL_7QIZ_178 | 1/S2/114:117, 1/S2/304:305 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_7QIZ_286 | 1/S2/118:123, 1/S2/299:303 | No text annotation | homologous IL_8P9A_382 IL_31545.1 | |
| IL_7QIZ_180 | 1/S2/141:147, 1/S2/163:170 | tWH-tWH-tHW-tHW | geometric IL_4V88_394 NA | |
| IL_7QIZ_181 | 1/S2/147:150, 1/S2/160:163 | Tandem non-canonical cWW pairs | geometric IL_3WBM_002 IL_15225.2 | |
| IL_7QIZ_182 | 1/S2/201:202, 1/S2/264:266 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_7QIZ_183 | 1/S2/202:203, 1/S2/262:264 | Single bulged C | geometric IL_1S03_002 IL_05642.3 | |
| IL_7QIZ_184 | 1/S2/203:205, 1/S2/260:262 | Isolated non-canonical cWW pair | geometric IL_4V88_398 NA | |
| IL_7QIZ_186 | 1/S2/268:270, 1/S2/292:293 | Single bulged A | geometric IL_4V88_399 NA | |
| IL_7QIZ_187 | 1/S2/273:276, 1/S2/287:289 | No text annotation | geometric IL_4V88_400 NA | |
| IL_7QIZ_188 | 1/S2/315:320, 1/S2/352:359 | Kink-turn with non-sequential stacking | geometric IL_4V88_402 NA | |
| IL_7QIZ_189 | 1/S2/322:327, 1/S2/349:350 | No text annotation | geometric IL_5Y58_001 IL_37738.1 | |
| IL_7QIZ_190 | 1/S2/367:369, 1/S2/380:385 | No text annotation | geometric IL_4V88_404 NA | |
| IL_7QIZ_191 | 1/S2/393:395, 1/S2/410:412 | Isolated cWH basepair | geometric IL_4V88_405 NA | |
| IL_7QIZ_192 | 1/S2/415:417, 1/S2/424:426 | Isolated near basepair | geometric IL_3NJ7_004 IL_42997.5 | |
| IL_7QIZ_287 | 1/S2/443:445, 1/S2/467:468 | Single bulged U | geometric IL_4V88_407 NA | |
| IL_7QIZ_305 | 1/S2/447:451, 1/S2/464:465 | C-loop | homologous IL_8P9A_397 IL_26900.1 | |
| IL_7QIZ_306 | 1/S2/451:452, 1/S2/462:464 | Single bulged G | homologous IL_8P9A_398 IL_28408.2 | |
| IL_7QIZ_288 | 1/S2/485:486, 1/S2/508:510 | Single bulged A | homologous IL_8P9A_399 IL_14190.2 | |
| IL_7QIZ_195 | 1/S2/517:519, 1/S2/539:546 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_7QIZ_196 | 1/S2/519:521, 1/S2/536:539 | Minor groove platform with extra cWW | geometric IL_4V88_411 NA | |
| IL_7QIZ_289 | 1/S2/520:523, 1/S2/535:538 | Double sheared; A in syn | geometric IL_8T29_001 IL_58355.2 | |
| IL_7QIZ_197 | 1/S2/521:523, 1/S2/535:536 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_7QIZ_198 | 1/S2/553:560, 1/S2/590:591 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_7QIZ_199 | 1/S2/560:562, 1/S2/589:590 | Single bulged U | geometric IL_4V88_407 NA | |
| IL_7QIZ_200 | 1/S2/565:571, 1/S2/578:586 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_7QIZ_201 | 1/S2/617:619, 1/S2/1108:1110 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_01003.4 | |
| IL_7QIZ_202 | 1/S2/619:625, 1/S2/1107:1108 | No text annotation | geometric IL_4LFB_022 IL_20847.1 | |
| IL_7QIZ_203 | 1/S2/627:629, 1/S2/976:978 | Isolated non-canonical cWW pair | geometric IL_4V88_417 NA | |
| IL_7QIZ_204 | 1/S2/630:634, 1/S2/971:975 | tSH-tHW-tHS | geometric IL_4V88_418 NA | |
| IL_7QIZ_290 | 1/S2/750:751, 1/S2/806:809 | No text annotation | homologous IL_8P9A_412 IL_73108.2 | |
| IL_7QIZ_207 | 1/S2/752:754, 1/S2/803:805 | Stack and bulge | geometric IL_2ET8_001 IL_53541.1 | |
| IL_7QIZ_208 | 1/S2/755:763, 1/S2/795:802 | No text annotation | geometric IL_4V88_425 NA | |
| IL_7QIZ_209 | 1/S2/868:869, 1/S2/965:968 | Major groove platform; stack outside cWW | geometric IL_4V88_428 NA | |
| IL_7QIZ_291 | 1/S2/871:872, 1/S2/961:963 | Single bulged U | geometric IL_6UFH_004 IL_97561.5 | |
| IL_7QIZ_211 | 1/S2/874:877, 1/S2/956:959 | Tandem non-canonical cWW pairs | geometric IL_4V88_430 NA | |
| IL_7QIZ_212 | 1/S2/877:881, 1/S2/953:956 | Tandem non-canonical cWW pairs | geometric IL_4V88_431 NA | |
| IL_7QIZ_213 | 1/S2/888:891, 1/S2/927:930 | Tandem non-canonical cWW pairs | geometric IL_4V88_432 NA | |
| IL_7QIZ_292 | 1/S2/898:902, 1/S2/913:920 | Kink-turn | geometric IL_4V88_434 NA | |
| IL_7QIZ_215 | 1/S2/988:993, 1/S2/1017:1019 | Other IL | geometric IL_4V88_435 NA | |
| IL_7QIZ_216 | 1/S2/993:997, 1/S2/1013:1017 | tSH-tHW-tHS | geometric IL_4V88_436 NA | |
| IL_7QIZ_218 | 1/S2/1037:1039, 1/S2/1098:1104 | No text annotation | geometric IL_4V88_437 NA | |
| IL_7QIZ_219 | 1/S2/1044:1047, 1/S2/1077:1080 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_7QIZ_220 | 1/S2/1054:1056, 1/S2/1069:1070 | Single stack bend | geometric IL_4C7O_002 IL_15011.3 | |
| IL_7QIZ_221 | 1/S2/1058:1060, 1/S2/1066:1067 | No text annotation | ||
| IL_7QIZ_222 | 1/S2/1114:1121, 1/S2/1132:1137 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | geometric IL_4V88_440 NA | |
| IL_7QIZ_223 | 1/S2/1149:1150, 1/S2/1636:1638 | Single bulged A | geometric IL_4LFB_035 IL_14190.2 | |
| IL_7QIZ_293 | 1/S2/1152:1154, 1/S2/1633:1634 | Single bulged G | homologous IL_8C3A_448 NA | |
| IL_7QIZ_225 | 1/S2/1160:1163, 1/S2/1623:1627 | C-loop | geometric IL_4V88_443 NA | |
| IL_7QIZ_294 | 1/S2/1176:1178, 1/S2/1469:1471 | Isolated non-canonical cWW pair | homologous IL_8P9A_432 IL_01003.4 | |
| IL_7QIZ_227 | 1/S2/1181:1182, 1/S2/1464:1466 | Minor groove platform | geometric IL_4V88_445 NA | |
| IL_7QIZ_295 | 1/S2/1216:1218, 1/S2/1453:1455 | Isolated non-canonical cWW pair | geometric IL_4PCJ_002 IL_68118.4 | |
| IL_7QIZ_296 | 1/S2/1271:1273, 1/S2/1445:1446 | Single bulged U | homologous IL_8C3A_455 NA | |
| IL_7QIZ_231 | 1/S2/1275:1279, 1/S2/1441:1443 | Isolated cWS basepair | geometric IL_4LFB_044 IL_82453.1 | |
| IL_7QIZ_297 | 1/S2/1275:1281, 1/S2/1435:1443 | No text annotation | homologous IL_8P9A_439 IL_99893.1 | |
| IL_7QIZ_232 | 1/S2/1279:1281, 1/S2/1435:1441 | Minor groove platform with extra cWW | geometric IL_4V88_451 NA | |
| IL_7QIZ_298 | 1/S2/1283:1284, 1/S2/1431:1433 | Single bulged A | homologous IL_8C3A_458 NA | |
| IL_7QIZ_299 | 1/S2/1293:1295, 1/S2/1326:1328 | Isolated cWH basepair | homologous IL_8P9A_442 IL_10892.2 | |
| IL_7QIZ_235 | 1/S2/1309:1311, 1/S2/1320:1321 | Minor groove platform | geometric IL_4V88_454 NA | |
| IL_7QIZ_236 | 1/S2/1342:1345, 1/S2/1388:1390 | Isolated non-canonical cWW pair | geometric IL_4V88_455 NA | |
| IL_7QIZ_237 | 1/S2/1348:1351, 1/S2/1382:1385 | Minor groove platform | geometric IL_4V88_456 NA | |
| IL_7QIZ_300 | 1/S2/1353:1356, 1/S2/1375:1380 | No text annotation | homologous IL_8P9A_446 NA | |
| IL_7QIZ_239 | 1/S2/1394:1397, 1/S2/1411:1417 | No text annotation | geometric IL_5J7L_053 NA | |
| IL_7QIZ_241 | 1/S2/1482:1484, 1/S2/1534:1536 | Stack and bulge | geometric IL_2ET8_001 IL_53541.1 | |
| IL_7QIZ_301 | 1/S2/1484:1492, 1/S2/1526:1534 | No text annotation | ||
| IL_7QIZ_242 | 1/S2/1493:1501, 1/S2/1520:1525 | 180 degree turn | geometric IL_5J7L_055 NA | |
| IL_7QIZ_243 | 1/S2/1503:1505, 1/S2/1516:1518 | Isolated non-canonical cWW pair | geometric IL_3RW6_004 IL_01003.4 | |
| IL_7QIZ_244 | 1/S2/1546:1551, 1/S2/1572:1577 | No text annotation | geometric IL_4V88_462 NA | |
| IL_7QIZ_245 | 1/S2/1642:1644, 1/S2/1772:1775 | No text annotation | geometric IL_5J7L_058 NA | |
| IL_7QIZ_246 | 1/S2/1644:1647, 1/S2/1768:1772 | No text annotation | homologous IL_8P9A_453 IL_25873.2 | |
| IL_7QIZ_247 | 1/S2/1648:1650, 1/S2/1765:1767 | Isolated non-canonical cWW pair | geometric IL_4V88_465 NA | |
| IL_7QIZ_248 | 1/S2/1650:1652, 1/S2/1762:1765 | Decoding loop related | geometric IL_5Z1I_003 NA | |
| IL_7QIZ_302 | 1/S2/1656:1658, 1/S2/1756:1758 | Isolated non-canonical cWW pair | homologous IL_8C3A_474 NA | |
| IL_7QIZ_250 | 1/S2/1659:1662, 1/S2/1752:1755 | Double sheared | geometric IL_4V88_468 NA | |
| IL_7QIZ_251 | 1/S2/1662:1664, 1/S2/1751:1752 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_7QIZ_252 | 1/S2/1670:1673, 1/S2/1742:1745 | Tandem non-canonical cWW pairs | geometric IL_4K27_001 IL_15225.2 | |
| IL_7QIZ_253 | 1/S2/1675:1678, 1/S2/1737:1740 | Double sheared | geometric IL_4V88_471 NA | |
| IL_7QIZ_254 | 1/S2/1681:1684, 1/S2/1731:1734 | Tandem non-canonical cWW pairs | geometric IL_5TBW_128 NA | |
| IL_7QIZ_255 | 1/S2/1684:1688, 1/S2/1727:1731 | Triple sheared | geometric IL_7RQB_075 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7QIZ_257 | No text annotation | ||
| IL_7QIZ_016 | Stack and bulge | ||
| IL_7QIZ_018 | Intercalated cWW | ||
| IL_7QIZ_021 | No text annotation | ||
| IL_7QIZ_027 | Tandem non-canonical cWW pairs | ||
| IL_7QIZ_033 | No text annotation | ||
| IL_7QIZ_044 | Stack and bulge | ||
| IL_7QIZ_045 | No text annotation | ||
| IL_7QIZ_046 | No text annotation | ||
| IL_7QIZ_047 | No text annotation | ||
| IL_7QIZ_049 | Minor groove platform with extra cWW | ||
| IL_7QIZ_050 | Isolated non-canonical cWW pair | ||
| IL_7QIZ_052 | No text annotation | ||
| IL_7QIZ_266 | No text annotation | ||
| IL_7QIZ_060 | No text annotation | ||
| IL_7QIZ_064 | 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge | ||
| IL_7QIZ_065 | Not an internal loop | ||
| IL_7QIZ_066 | Isolated non-canonical cWW pair | ||
| IL_7QIZ_269 | No text annotation | ||
| IL_7QIZ_085 | No text annotation | ||
| IL_7QIZ_087 | Major groove platform with extra pair | ||
| IL_7QIZ_092 | Isolated non-canonical cWW pair | ||
| IL_7QIZ_093 | Isolated non-canonical cWW pair | ||
| IL_7QIZ_096 | Stack and bulge | ||
| IL_7QIZ_100 | Minor groove platform with extra cWW | ||
| IL_7QIZ_101 | No text annotation | ||
| IL_7QIZ_102 | Not an internal loop | ||
| IL_7QIZ_103 | Not an internal loop | ||
| IL_7QIZ_105 | No text annotation | ||
| IL_7QIZ_106 | No text annotation | ||
| IL_7QIZ_107 | Isolated non-canonical cWW pair | ||
| IL_7QIZ_109 | No text annotation | ||
| IL_7QIZ_111 | Isolated non-canonical cWW pair | ||
| IL_7QIZ_114 | No text annotation | ||
| IL_7QIZ_116 | No text annotation | ||
| IL_7QIZ_277 | Isolated near basepair | ||
| IL_7QIZ_119 | Isolated non-canonical cWW pair | ||
| IL_7QIZ_121 | Isolated non-canonical cWW pair | ||
| IL_7QIZ_122 | No text annotation | ||
| IL_7QIZ_123 | Isolated non-canonical cWW pair | ||
| IL_7QIZ_125 | No text annotation | ||
| IL_7QIZ_127 | Not an internal loop | ||
| IL_7QIZ_130 | No text annotation | ||
| IL_7QIZ_132 | Stack and bulge | ||
| IL_7QIZ_134 | Isolated cWH basepair | ||
| IL_7QIZ_135 | Isolated non-canonical cWW pair | ||
| IL_7QIZ_137 | No text annotation | ||
| IL_7QIZ_146 | Tandem non-canonical cWW pairs | ||
| IL_7QIZ_147 | No text annotation | ||
| IL_7QIZ_163 | Isolated cWH basepair | ||
| IL_7QIZ_168 | Stack and bulge | ||
| IL_7QIZ_169 | Isolated non-canonical cWW pair | ||
| IL_7QIZ_170 | Isolated non-canonical cWW pair | ||
| IL_7QIZ_177 | No text annotation | ||
| IL_7QIZ_179 | No text annotation | ||
| IL_7QIZ_185 | Tandem non-canonical cWW pairs | ||
| IL_7QIZ_193 | C-loop with extra cWW pair | ||
| IL_7QIZ_194 | Isolated non-canonical cWW pair | ||
| IL_7QIZ_205 | Stack and bulge | ||
| IL_7QIZ_206 | No text annotation | ||
| IL_7QIZ_210 | Tandem non-canonical cWW pairs | ||
| IL_7QIZ_214 | Kink-turn | ||
| IL_7QIZ_217 | Isolated non-canonical cWW pair | ||
| IL_7QIZ_224 | Intercalated cWW | ||
| IL_7QIZ_226 | Tandem non-canonical cWW pairs | ||
| IL_7QIZ_228 | No text annotation | ||
| IL_7QIZ_229 | Isolated non-canonical cWW pair | ||
| IL_7QIZ_230 | Isolated non-canonical cWW pair | ||
| IL_7QIZ_233 | Isolated non-canonical cWW pair | ||
| IL_7QIZ_234 | No text annotation | ||
| IL_7QIZ_238 | No text annotation | ||
| IL_7QIZ_240 | Stack and bulge | ||
| IL_7QIZ_249 | Tandem non-canonical cWW pairs | ||
| IL_7QIZ_256 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7QIZ_001 | 1/2/111:121, 1/2/147:156, 1/2/260:264 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_7QIZ_030 | 1/2/111:122, 1/2/142:156, 1/2/260:264 | No text annotation | ||
| J3_7QIZ_031 | 1/2/183:186, 1/2/202:211, 1/2/223:227 | No text annotation | ||
| J3_7QIZ_032 | 1/2/337:353, 1/2/360:365, 1/8/26:29 | No text annotation | homologous J3_8P9A_045 J3_07616.1 | |
| J3_7QIZ_002 | 1/2/366:373, 1/2/400:401, 1/8/24:25 | No text annotation | geometric J3_5TBW_002 NA | |
| J3_7QIZ_033 | 1/2/366:376, 1/2/387:401, 1/8/24:25 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_7QIZ_034 | 1/2/433:440, 1/2/496:498, 1/2/628:633 | No text annotation | ||
| J3_7QIZ_003 | 1/2/436:440, 1/2/496:498, 1/2/628:632 | No text annotation | ||
| J3_7QIZ_004 | 1/2/506:508, 1/2/569:579, 1/2/615:620 | No text annotation | ||
| J3_7QIZ_005 | 1/2/585:586, 1/2/594:595, 1/2/607:609 | No text annotation | ||
| J3_7QIZ_006 | 1/2/824:830, 1/2/915:917, 1/2/933:936 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_7QIZ_007 | 1/2/839:841, 1/2/873:877, 1/2/902:905 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_7QIZ_035 | 1/2/998:999, 1/2/1074:1078, 1/2/1104:1109 | No text annotation | ||
| J3_7QIZ_008 | 1/2/1490:1496, 1/2/1863:1865, 1/2/1877:1880 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_7QIZ_036 | 1/2/1499:1502, 1/2/1843:1849, 1/2/1858:1860 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_7QIZ_037 | 1/2/1537:1542, 1/2/1596:1600, 1/2/1617:1618 | No text annotation | homologous J3_8P9A_055 J3_94309.1 | |
| J3_7QIZ_010 | 1/2/1549:1551, 1/2/1567:1571, 1/2/1583:1587 | No text annotation | ||
| J3_7QIZ_011 | 1/2/1635:1636, 1/2/1645:1649, 1/2/1816:1817 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_7QIZ_038 | 1/2/1658:1662, 1/2/1797:1798, 1/2/1802:1807 | No text annotation | homologous J3_8P9A_058 J3_08594.1 | |
| J3_7QIZ_039 | 1/2/2434:2438, 1/2/2517:2521, 1/2/2595:2602 | No text annotation | ||
| J3_7QIZ_040 | 1/2/2655:2657, 1/2/2758:2769, 1/2/2797:2802 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_7QIZ_013 | 1/2/2668:2670, 1/2/2694:2696, 1/2/2705:2710 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_7QIZ_014 | 1/2/2890:2893, 1/2/2918:2920, 1/2/2934:2940 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_7QIZ_041 | 1/2/3172:3175, 1/2/3207:3218, 1/2/3255:3271 | No text annotation | ||
| J3_7QIZ_042 | 1/5/9:14, 1/5/65:66, 1/5/109:110 | No text annotation | homologous J3_8P9A_066 J3_26985.1 | |
| J3_7QIZ_043 | 1/8/49:50, 1/8/63:69, 1/8/101:105 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_7QIZ_044 | 1/S2/41:42, 1/S2/437:443, 1/S2/468:470 | No text annotation | geometric J3_4V88_078 NA | |
| J3_7QIZ_045 | 1/S2/41:48, 1/S2/435:443, 1/S2/468:470 | No text annotation | homologous J3_8P9A_069 J3_63856.1 | |
| J3_7QIZ_018 | 1/S2/636:639, 1/S2/863:868, 1/S2/968:969 | No text annotation | ||
| J3_7QIZ_046 | 1/S2/636:639, 1/S2/863:869, 1/S2/965:969 | No text annotation | ||
| J3_7QIZ_019 | 1/S2/764:767, 1/S2/777:779, 1/S2/788:794 | No text annotation | homologous J3_8C3A_035 NA | |
| J3_7QIZ_047 | 1/S2/884:887, 1/S2/931:939, 1/S2/946:950 | No text annotation | homologous J3_8P9A_074 J3_23895.1 | |
| J3_7QIZ_021 | 1/S2/1040:1042, 1/S2/1082:1086, 1/S2/1093:1097 | No text annotation | geometric J3_4V88_034 NA | |
| J3_7QIZ_022 | 1/S2/1164:1167, 1/S2/1587:1593, 1/S2/1615:1622 | No text annotation | homologous J3_8C3A_038 NA | |
| J3_7QIZ_023 | 1/S2/1171:1174, 1/S2/1473:1475, 1/S2/1580:1583 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_7QIZ_048 | 1/S2/1183:1190, 1/S2/1201:1212, 1/S2/1459:1463 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_7QIZ_049 | 1/S2/1218:1223, 1/S2/1266:1270, 1/S2/1447:1453 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_7QIZ_026 | 1/S2/1286:1291, 1/S2/1330:1335, 1/S2/1424:1429 | No text annotation | homologous J3_8P9A_080 J3_17077.1 | |
| J3_7QIZ_027 | 1/S2/1296:1297, 1/S2/1306:1309, 1/S2/1321:1325 | No text annotation | homologous J3_8P9A_081 J3_76043.4 | |
| J3_7QIZ_028 | 1/S2/1339:1341, 1/S2/1391:1394, 1/S2/1417:1420 | No text annotation | homologous J3_8C3A_043 NA | |
| J3_7QIZ_050 | 1/S2/1339:1341, 1/S2/1391:1397, 1/S2/1411:1420 | No text annotation | ||
| J3_7QIZ_029 | 1/S2/1475:1479, 1/S2/1539:1546, 1/S2/1577:1580 | No text annotation | homologous J3_8C3A_044 NA | |
| J4_7QIZ_001 | 1/2/110:111, 1/2/264:269, 1/2/290:296, 1/2/313:316 | No text annotation | homologous J4_8P9A_012 J4_94698.1 | |
| J4_7QIZ_002 | 1/2/183:186, 1/2/202:205, 1/2/209:211, 1/2/223:227 | No text annotation | ||
| J4_7QIZ_003 | 1/2/1462:1468, 1/2/1486:1487, 1/2/1883:1886, 1/2/2355:2356 | No text annotation | homologous J4_8C3A_003 NA | |
| J4_7QIZ_004 | 1/2/1503:1507, 1/2/1531:1536, 1/2/1619:1620, 1/2/1835:1842 | No text annotation | homologous J4_8P9A_015 J4_47264.1 | |
| J4_7QIZ_005 | 1/2/1678:1679, 1/2/1697:1698, 1/2/1757:1758, 1/2/1778:1779 | No text annotation | homologous J4_8C3A_005 NA | |
| J4_7QIZ_006 | 1/2/2134:2138, 1/2/2150:2154, 1/2/2189:2193, 1/2/2320:2325 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_7QIZ_007 | 1/2/2195:2197, 1/2/2251:2252, 1/2/2270:2279, 1/2/2313:2318 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_7QIZ_008 | 1/2/2658:2662, 1/2/2716:2718, 1/2/2745:2746, 1/2/2755:2757 | No text annotation | ||
| J4_7QIZ_009 | 1/2/2658:2662, 1/2/2716:2720, 1/2/2744:2746, 1/2/2755:2757 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_7QIZ_010 | 1/2/3013:3015, 1/2/3045:3046, 1/2/3101:3103, 1/2/3137:3139 | No text annotation | homologous J4_8P9A_020 J4_37757.1 | |
| J4_7QIZ_011 | 1/S2/100:108, 1/S2/311:313, 1/S2/361:365, 1/S2/387:388 | No text annotation | homologous J4_8P9A_021 J4_15241.2 | |
| J4_7QIZ_012 | 1/S2/625:627, 1/S2/978:983, 1/S2/1024:1035, 1/S2/1106:1107 | No text annotation | homologous J4_8P9A_022 J4_14595.1 | |
| J5_7QIZ_001 | 1/2/18:20, 1/8/40:47, 1/8/107:112, 1/8/120:121, 1/8/144:146 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_7QIZ_002 | 1/2/669:674, 1/2/809:812, 1/2/951:954, 1/2/1387:1388, 1/2/1442:1448 | No text annotation | homologous J5_8P9A_011 J5_08384.1 | |
| J5_7QIZ_003 | 1/2/686:689, 1/2/715:719, 1/2/726:731, 1/2/759:761, 1/2/792:797 | No text annotation | ||
| J5_7QIZ_004 | 1/2/1912:1920, 1/2/1944:1945, 1/2/2113:2114, 1/2/2118:2126, 1/2/2334:2336 | No text annotation | homologous J5_8P9A_013 J5_99177.1 | |
| J5_7QIZ_010 | 1/2/2402:2409, 1/2/2819:2827, 1/2/2871:2880, 1/2/2955:2961, 1/2/2979:2984 | No text annotation | ||
| J5_7QIZ_006 | 1/2/2419:2422, 1/2/2615:2618, 1/2/2631:2632, 1/2/2654:2655, 1/2/2802:2808 | No text annotation | homologous J5_8P9A_015 J5_96125.1 | |
| J5_7QIZ_007 | 1/S2/31:35, 1/S2/477:483, 1/S2/512:517, 1/S2/546:549, 1/S2/595:598 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_7QIZ_008 | 1/S2/31:35, 1/S2/477:483, 1/S2/512:519, 1/S2/539:549, 1/S2/595:598 | No text annotation | ||
| J5_7QIZ_009 | 1/S2/54:57, 1/S2/91:98, 1/S2/390:392, 1/S2/413:415, 1/S2/426:430 | No text annotation | homologous J5_8C3A_020 NA | |
| J6_7QIZ_001 | 1/2/20:25, 1/2/56:66, 1/2/73:77, 1/2/104:108, 1/2/318:328, 1/8/37:40 | No text annotation | ||
| J6_7QIZ_002 | 1/2/2419:2422, 1/2/2615:2618, 1/2/2631:2632, 1/2/2654:2657, 1/2/2758:2769, 1/2/2797:2808 | No text annotation | ||
| J7_7QIZ_001 | 1/2/959:964, 1/2/977:978, 1/2/1125:1128, 1/2/1152:1157, 1/2/1168:1172, 1/2/1350:1351, 1/2/1377:1382 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7QIZ_009 | No text annotation | ||
| J3_7QIZ_012 | No text annotation | ||
| J3_7QIZ_015 | No text annotation | ||
| J3_7QIZ_016 | No text annotation | ||
| J3_7QIZ_017 | No text annotation | ||
| J3_7QIZ_020 | No text annotation | ||
| J3_7QIZ_024 | No text annotation | ||
| J3_7QIZ_025 | No text annotation | ||
| J5_7QIZ_005 | No text annotation |
Coloring options: