HL_7QIZ_009
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- GGUGAAUUCC
- Length
- 10 nucleotides
- Bulged bases
- 7QIZ|1|2|G|301, 7QIZ|1|2|U|302
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QIZ_009 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.0844
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
7QIZ|1|2|G|300
7QIZ|1|2|G|301
7QIZ|1|2|U|302
7QIZ|1|2|G|303
7QIZ|1|2|A|304
7QIZ|1|2|A|305
7QIZ|1|2|U|306
7QIZ|1|2|U|307
7QIZ|1|2|C|308
7QIZ|1|2|C|309
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain P
- Ribosomal protein L15
- Chain c
- Ribosomal_L18e/L15P domain-containing protein
- Chain k
- 60S ribosomal protein L36
- Chain p
- 60S ribosomal protein eL42
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