HL_7QIZ_015

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7QIZ|1|2|U|600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_015 not in the Motif Atlas

Geometric match to HL_5J7L_175

Geometric discrepancy: 0.1006

The information below is about HL_5J7L_175

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7QIZ|1|2|C|598
7QIZ|1|2|U|599
7QIZ|1|2|U|600
7QIZ|1|2|C|601
7QIZ|1|2|G|602
7QIZ|1|2|G|603

Current chains

Chain 2

25S rRNA

Nearby chains

Chain F

Ribos_L4_asso_C domain-containing protein

Chain H

Ribosomal_L6e_N domain-containing protein

Chain I

Thaliana 60S ribosomal protein L7