HL_7QIZ_019

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CCUGAG

Length

6 nucleotides

Bulged bases

7QIZ|1|2|A|746

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_019 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.2631

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.8

Basepair signature

cWW-F

Number of instances in this motif group

23

Unit IDs

7QIZ|1|2|C|742
7QIZ|1|2|C|743
7QIZ|1|2|U|744
7QIZ|1|2|G|745
7QIZ|1|2|A|746
7QIZ|1|2|G|747

Current chains

Chain 2

25S rRNA

Nearby chains

Chain I

Thaliana 60S ribosomal protein L7

Chain V

60S ribosomal protein eL21