HL_7QIZ_022

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

G(A2M)CGUGCAAA(PSU)C

Length

12 nucleotides

Bulged bases

7QIZ|1|2|U|889, 7QIZ|1|2|A|893

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QIZ|1|2|G|885
7QIZ|1|2|A2M|886
7QIZ|1|2|C|887
7QIZ|1|2|G|888
7QIZ|1|2|U|889
7QIZ|1|2|G|890
7QIZ|1|2|C|891
7QIZ|1|2|A|892
7QIZ|1|2|A|893
7QIZ|1|2|A|894
7QIZ|1|2|PSU|895
7QIZ|1|2|C|896

Current chains

Chain 2

25S rRNA

Nearby chains

Chain E

Ribosomal protein L3

Chain R

50S ribosomal protein L22, chloroplastic

Chain l

Ribosomal protein L37