HL_7QIZ_026

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

7QIZ|1|2|G|1142

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_026 not in the Motif Atlas

Geometric match to HL_5TBW_025

Geometric discrepancy: 0.0538

The information below is about HL_5TBW_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7QIZ|1|2|G|1137
7QIZ|1|2|G|1138
7QIZ|1|2|U|1139
7QIZ|1|2|A|1140
7QIZ|1|2|A|1141
7QIZ|1|2|G|1142
7QIZ|1|2|C|1143

Current chains

Chain 2

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L10