HL_7QIZ_028
3D structure
- PDB id
- 7QIZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Specific features and methylation sites of a plant 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CAAGUGCCAGG
- Length
- 11 nucleotides
- Bulged bases
- 7QIZ|1|2|A|1361, 7QIZ|1|2|U|1363, 7QIZ|1|2|C|1366, 7QIZ|1|2|G|1368
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7QIZ_028 not in the Motif Atlas
- Geometric match to HL_4OOG_001
- Geometric discrepancy: 0.1557
- The information below is about HL_4OOG_001
- Detailed Annotation
- Mini UNCG
- Broad Annotation
- No text annotation
- Motif group
- HL_12626.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 17
Unit IDs
7QIZ|1|2|C|1359
7QIZ|1|2|A|1360
7QIZ|1|2|A|1361
7QIZ|1|2|G|1362
7QIZ|1|2|U|1363
7QIZ|1|2|G|1364
7QIZ|1|2|C|1365
7QIZ|1|2|C|1366
7QIZ|1|2|A|1367
7QIZ|1|2|G|1368
7QIZ|1|2|G|1369
Current chains
- Chain 2
- 25S rRNA
Nearby chains
- Chain F
- Ribos_L4_asso_C domain-containing protein
- Chain I
- Thaliana 60S ribosomal protein L7
- Chain S
- Ribosomal_L18e/L15P domain-containing protein
- Chain r
- Ribosomal_L28e domain-containing protein
Coloring options: