HL_7QIZ_029

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_029 not in the Motif Atlas

Homologous match to HL_8C3A_030

Geometric discrepancy: 0.0907

The information below is about HL_8C3A_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7QIZ|1|2|C|1414
7QIZ|1|2|G|1415
7QIZ|1|2|C|1416
7QIZ|1|2|G|1417
7QIZ|1|2|A|1418
7QIZ|1|2|G|1419

Current chains

Chain 2

25S rRNA

Nearby chains

Chain g

60S ribosomal protein eL32

Chain r

Ribosomal_L28e domain-containing protein