HL_7QIZ_030

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

A(PSU)GAGAA(OMC)U

Length

9 nucleotides

Bulged bases

7QIZ|1|2|A|1479

QA status

Modified nucleotides: PSU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_030 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.2547

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7QIZ|1|2|A|1473
7QIZ|1|2|PSU|1474
7QIZ|1|2|G|1475
7QIZ|1|2|A|1476
7QIZ|1|2|G|1477
7QIZ|1|2|A|1478
7QIZ|1|2|A|1479
7QIZ|1|2|OMC|1480
7QIZ|1|2|U|1481

Current chains

Chain 2

25S rRNA

Nearby chains

Chain T

Ribosomal protein L19

Chain f

60S ribosomal protein eL31