HL_7QIZ_032

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GGAACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_032 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.2503

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

7QIZ|1|2|G|1555
7QIZ|1|2|G|1556
7QIZ|1|2|A|1557
7QIZ|1|2|A|1558
7QIZ|1|2|C|1559
7QIZ|1|2|C|1560

Current chains

Chain 2

25S rRNA

Nearby chains

Chain P

Ribosomal protein L15

Chain l

Ribosomal protein L37