HL_7QIZ_039

3D structure

PDB id

7QIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific features and methylation sites of a plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CCUUG

Length

5 nucleotides

Bulged bases

7QIZ|1|2|C|1799

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7QIZ_039 not in the Motif Atlas

Homologous match to HL_8C3A_040

Geometric discrepancy: 0.0863

The information below is about HL_8C3A_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

7QIZ|1|2|C|1798
7QIZ|1|2|C|1799
7QIZ|1|2|U|1800
7QIZ|1|2|U|1801
7QIZ|1|2|G|1802

Current chains

Chain 2

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain q

60S ribosomal protein eL43